Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3) - Rat Genome Database

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Gene: Hnrnpa3 (heterogeneous nuclear ribonucleoprotein A3) Heterocephalus glaber
Analyze
Symbol: Hnrnpa3
Name: heterogeneous nuclear ribonucleoprotein A3
RGD ID: 18911763
Description: ENCODES a protein that exhibits mRNA binding (ortholog); RNA transmembrane transporter activity (ortholog); INVOLVED IN mRNA transport (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); silicosis (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478714,341,250 - 14,346,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478714,341,133 - 14,352,152 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hnrnpa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478714,341,250 - 14,346,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478714,341,133 - 14,352,152 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HNRNPA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382177,212,794 - 177,223,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2177,212,694 - 177,223,959 (+)EnsemblGRCh38hg38GRCh38
GRCh372178,077,522 - 178,088,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362177,785,668 - 177,796,931 (+)NCBINCBI36Build 36hg18NCBI36
Build 342177,903,034 - 177,909,534NCBI
Celera2171,679,860 - 171,691,117 (+)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2169,948,728 - 169,959,989 (+)NCBIHuRef
CHM1_12178,083,270 - 178,094,521 (+)NCBICHM1_1
T2T-CHM13v2.02177,695,036 - 177,706,189 (+)NCBIT2T-CHM13v2.0
Hnrnpa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39275,489,416 - 75,499,751 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl275,489,605 - 75,499,751 (+)EnsemblGRCm39 Ensembl
GRCm38275,659,105 - 75,669,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl275,659,261 - 75,669,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv37275,497,316 - 75,507,464 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36275,460,116 - 75,470,246 (+)NCBIMGSCv36mm8
Celera277,320,414 - 77,330,443 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.75NCBI
Hnrnpa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8380,984,470 - 80,999,413 (+)NCBIGRCr8
mRatBN7.2360,578,574 - 60,588,755 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl360,578,673 - 60,588,306 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx363,952,911 - 63,963,020 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0372,536,567 - 72,546,676 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0370,302,815 - 70,312,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0362,481,222 - 62,491,356 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl362,481,323 - 62,487,227 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0369,029,029 - 69,036,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,872,863 - 68,875,337 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera360,079,220 - 60,089,344 (+)NCBICelera
Cytogenetic Map3q23NCBI
Hnrnpa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540319,544,842 - 19,548,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540319,540,814 - 19,548,417 (-)NCBIChiLan1.0ChiLan1.0
HNRNPA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21379,879,341 - 79,890,582 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B79,894,297 - 79,905,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B64,491,827 - 64,503,095 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B182,196,645 - 182,208,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B182,196,645 - 182,207,937 (+)Ensemblpanpan1.1panPan2
HNRNPA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13620,974,541 - 20,983,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3620,974,648 - 20,980,137 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3620,994,264 - 21,003,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03621,118,619 - 21,127,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3621,118,687 - 21,128,350 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13621,189,273 - 21,198,469 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03621,190,448 - 21,199,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03621,306,219 - 21,315,411 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303138,022,961 - 138,032,537 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365096,577,001 - 6,581,934 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365096,576,933 - 6,585,734 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1582,958,362 - 82,968,736 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11582,958,329 - 82,968,740 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21592,417,689 - 92,428,369 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11062,772,741 - 62,780,695 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1062,772,806 - 62,778,972 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040136,826,743 - 136,837,738 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007583   ⟹   ENSHGLP00000007498
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478714,341,250 - 14,346,316 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007584   ⟹   ENSHGLP00000007499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478714,341,250 - 14,346,316 (+)Ensembl
RefSeq Acc Id: XM_004857733   ⟹   XP_004857790
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478714,341,133 - 14,350,460 (+)NCBI
RefSeq Acc Id: XM_021238556   ⟹   XP_021094215
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478714,341,163 - 14,346,320 (+)NCBI
RefSeq Acc Id: XR_002387027
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478714,341,133 - 14,352,152 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857790 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094215 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007498
  ENSHGLP00100014213
GenBank Protein JAN99245 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857790   ⟸   XM_004857733
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ETH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094215   ⟸   XM_021238556
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000007499   ⟸   ENSHGLT00000007584
RefSeq Acc Id: ENSHGLP00000007498   ⟸   ENSHGLT00000007583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005451 Ensembl, ENTREZGENE
  ENSHGLG00100010504 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007583 ENTREZGENE
  ENSHGLT00100014371 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNPA3_RRM2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101697298 UniProtKB/TrEMBL
NCBI Gene Hnrnpa3 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A3 UniProtKB/TrEMBL
  HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0N8ETH2 ENTREZGENE, UniProtKB/TrEMBL