Crtac1 (cartilage acidic protein 1) - Rat Genome Database

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Gene: Crtac1 (cartilage acidic protein 1) Heterocephalus glaber
Analyze
Symbol: Crtac1
Name: cartilage acidic protein 1
RGD ID: 18911605
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN axonal fasciculation (ortholog); olfactory bulb development (ortholog); regulation of synapse assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); growth cone (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,497,385 - 9,653,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,498,107 - 9,653,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Crtac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,497,385 - 9,653,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,498,107 - 9,653,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CRTAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,865,000 - 98,030,621 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,865,000 - 98,030,828 (-)EnsemblGRCh38hg38GRCh38
GRCh371099,624,757 - 99,790,378 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,614,748 - 99,780,575 (-)NCBINCBI36Build 36hg18NCBI36
Build 341099,614,747 - 99,780,575NCBI
Celera1093,362,034 - 93,527,517 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1093,250,028 - 93,415,859 (-)NCBIHuRef
CHM1_11099,906,455 - 100,072,353 (-)NCBICHM1_1
T2T-CHM13v2.01098,745,137 - 98,911,010 (-)NCBIT2T-CHM13v2.0
Crtac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,271,474 - 42,421,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,256,726 - 42,420,224 (-)EnsemblGRCm39 Ensembl
GRCm381942,283,035 - 42,432,966 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,268,287 - 42,431,785 (-)EnsemblGRCm38mm10GRCm38
MGSCv371942,357,527 - 42,506,273 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,336,346 - 42,484,958 (-)NCBIMGSCv36mm8
Celera1943,080,084 - 43,226,365 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.07NCBI
Crtac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,040,963 - 251,182,920 (-)NCBIGRCr8
mRatBN7.21241,091,679 - 241,233,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,078,864 - 241,233,421 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1249,237,277 - 249,378,994 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,934,422 - 256,076,138 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,587,436 - 248,729,145 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,527,009 - 261,669,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,514,141 - 261,669,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,979,481 - 269,122,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41248,430,156 - 248,571,877 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11248,818,538 - 248,831,294 (+)NCBI
Celera1236,925,180 - 237,066,080 (-)NCBICelera
Cytogenetic Map1q54NCBI
Crtac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,916,625 - 4,062,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,916,803 - 4,062,118 (-)NCBIChiLan1.0ChiLan1.0
CRTAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,782,187 - 109,933,172 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,787,506 - 109,938,491 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,476,425 - 94,641,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,973,565 - 98,138,558 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1097,973,565 - 98,138,558 (-)Ensemblpanpan1.1panPan2
CRTAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12811,078,085 - 11,227,026 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2811,078,173 - 11,227,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,262,037 - 11,410,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,417,417 - 11,551,990 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,386,116 - 11,551,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12811,087,824 - 11,236,417 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02811,125,254 - 11,274,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,265,185 - 11,413,985 (-)NCBIUU_Cfam_GSD_1.0
Crtac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721335,709,767 - 35,844,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366361,748,883 - 1,884,705 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366361,748,883 - 1,883,958 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRTAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14109,223,293 - 109,390,691 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114109,237,182 - 109,390,832 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CRTAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1991,030,730 - 91,207,649 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl991,030,509 - 91,193,769 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,930,973 - 52,096,982 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016490   ⟹   ENSHGLP00000016321
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247379,497,385 - 9,653,289 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000016491   ⟹   ENSHGLP00000016322
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247379,511,288 - 9,653,295 (-)Ensembl
RefSeq Acc Id: XM_004838628   ⟹   XP_004838685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247379,503,670 - 9,653,493 (-)NCBI
RefSeq Acc Id: XM_004838629   ⟹   XP_004838686
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247379,503,670 - 9,653,492 (-)NCBI
RefSeq Acc Id: XM_021253172   ⟹   XP_021108831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247379,498,107 - 9,653,496 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004838685 (Get FASTA)   NCBI Sequence Viewer  
  XP_004838686 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108831 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016321
  ENSHGLP00000016322
GenBank Protein JAO02231 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021108831   ⟸   XM_021253172
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JGV0 (UniProtKB/TrEMBL),   G5BE37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004838685   ⟸   XM_004838628
- Peptide Label: isoform X2
- UniProtKB: G5BE37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004838686   ⟸   XM_004838629
- Peptide Label: isoform X3
- UniProtKB: G5BE37 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016321   ⟸   ENSHGLT00000016490
RefSeq Acc Id: ENSHGLP00000016322   ⟸   ENSHGLT00000016491


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011698 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016490 ENTREZGENE
  ENSHGLT00000016491 ENTREZGENE
Gene3D-CATH Integrin alpha, N-terminal UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Crtac1 UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  FG-GAP UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  UnbV_ASPIC UniProtKB/TrEMBL
NCBI Gene Crtac1 ENTREZGENE
PANTHER CARTILAGE ACIDIC PROTEIN 1 UniProtKB/TrEMBL
  CARTILAGE ACIDIC PROTEIN 1 UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  UnbV_ASPIC UniProtKB/TrEMBL
  VCBS UniProtKB/TrEMBL
PROSITE EGF_CA UniProtKB/TrEMBL
SMART EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF69318 UniProtKB/TrEMBL
UniProt A0A0P6JGV0 ENTREZGENE, UniProtKB/TrEMBL
  G5BE37 ENTREZGENE, UniProtKB/TrEMBL