Stat4 (signal transducer and activator of transcription 4) - Rat Genome Database

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Gene: Stat4 (signal transducer and activator of transcription 4) Heterocephalus glaber
Analyze
Symbol: Stat4
Name: signal transducer and activator of transcription 4
RGD ID: 18911540
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); cellular response to organic cyclic compound (ortholog); cellular response to organic substance (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH Alcoholic Fatty Liver (ortholog); asthma (ortholog); autoimmune hepatitis (ortholog); FOUND IN nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,976,507 - 5,057,391 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248544,975,724 - 5,056,940 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Stat4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,976,507 - 5,057,391 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248544,975,724 - 5,056,940 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STAT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,029,576 - 191,151,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,029,576 - 191,151,596 (-)EnsemblGRCh38hg38GRCh38
GRCh372191,894,302 - 192,016,322 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,602,551 - 191,724,170 (-)NCBINCBI36Build 36hg18NCBI36
Build 342191,719,811 - 191,841,431NCBI
Celera2185,488,908 - 185,610,548 (-)NCBICelera
Cytogenetic Map2q32.2-q32.3NCBI
HuRef2183,753,956 - 183,875,743 (-)NCBIHuRef
CHM1_12191,900,128 - 192,022,113 (-)NCBICHM1_1
T2T-CHM13v2.02191,518,699 - 191,663,236 (-)NCBIT2T-CHM13v2.0
Stat4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,026,265 - 52,146,348 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl152,026,307 - 52,146,348 (+)EnsemblGRCm39 Ensembl
GRCm38151,987,106 - 52,107,189 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,987,148 - 52,107,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv37152,065,088 - 52,164,028 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36151,952,789 - 52,051,729 (+)NCBIMGSCv36mm8
Celera152,546,764 - 52,645,629 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.67NCBI
Stat4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8956,964,617 - 57,080,523 (-)NCBIGRCr8
mRatBN7.2949,472,660 - 49,588,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl949,419,340 - 49,588,540 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx958,021,896 - 58,130,745 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,144,732 - 63,253,572 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0961,440,716 - 61,549,562 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0954,340,649 - 54,457,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl954,287,541 - 54,484,533 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0954,051,154 - 54,167,491 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4946,510,251 - 46,650,076 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1946,511,665 - 46,651,490 (-)NCBI
Celera947,135,713 - 47,243,684 (-)NCBICelera
Cytogenetic Map9q22NCBI
Stat4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554038,061,471 - 8,144,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,061,471 - 8,144,252 (+)NCBIChiLan1.0ChiLan1.0
STAT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21393,711,969 - 93,930,627 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B93,727,052 - 93,945,611 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B78,331,402 - 78,549,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B196,247,617 - 196,394,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B196,247,881 - 196,366,011 (-)Ensemblpanpan1.1panPan2
STAT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,566,563 - 1,685,378 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,566,585 - 1,829,894 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,514,598 - 2,633,404 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,453,968 - 1,572,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,453,990 - 1,550,821 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,463,313 - 1,581,898 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,431,241 - 1,549,848 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,459,885 - 1,578,875 (-)NCBIUU_Cfam_GSD_1.0
Stat4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303149,652,139 - 149,767,224 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365067,095,009 - 7,184,689 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365067,091,982 - 7,185,938 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1595,656,077 - 95,763,472 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11595,656,206 - 95,764,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215106,914,582 - 106,960,243 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.215107,069,138 - 107,073,997 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11076,553,626 - 76,708,540 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1076,553,606 - 76,674,928 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040122,773,405 - 122,923,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000004378   ⟹   ENSHGLP00000004318
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248544,976,507 - 5,057,391 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000004379   ⟹   ENSHGLP00000004319
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248544,979,207 - 5,056,720 (+)Ensembl
RefSeq Acc Id: XM_004868958   ⟹   XP_004869015
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248544,976,528 - 5,056,940 (+)NCBI
RefSeq Acc Id: XM_013067154   ⟹   XP_012922608
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248544,975,878 - 5,056,940 (+)NCBI
RefSeq Acc Id: XM_021247730   ⟹   XP_021103389
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248544,975,724 - 5,056,940 (+)NCBI
RefSeq Acc Id: XM_021247731   ⟹   XP_021103390
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248544,976,528 - 5,056,940 (+)NCBI
RefSeq Acc Id: XM_021247732   ⟹   XP_021103391
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248544,976,528 - 5,056,940 (+)NCBI
RefSeq Acc Id: XM_021247733   ⟹   XP_021103392
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248545,007,442 - 5,056,940 (+)NCBI
RefSeq Acc Id: XP_021103389   ⟸   XM_021247730
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J7T0 (UniProtKB/TrEMBL),   G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922608   ⟸   XM_013067154
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J7T0 (UniProtKB/TrEMBL),   G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869015   ⟸   XM_004868958
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J7T0 (UniProtKB/TrEMBL),   G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103390   ⟸   XM_021247731
- Peptide Label: isoform X2
- UniProtKB: G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103391   ⟸   XM_021247732
- Peptide Label: isoform X3
- UniProtKB: G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103392   ⟸   XM_021247733
- Peptide Label: isoform X4
- UniProtKB: G5BGK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004318   ⟸   ENSHGLT00000004378
RefSeq Acc Id: ENSHGLP00000004319   ⟸   ENSHGLT00000004379


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003160 Ensembl, ENTREZGENE
  ENSHGLG00100011374 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004378 ENTREZGENE
  ENSHGLT00000004379 ENTREZGENE
  ENSHGLT00100015558 UniProtKB/TrEMBL
Gene3D-CATH 1.10.532.10 UniProtKB/TrEMBL
  2.60.40.630 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  STAT transcription factor, all-alpha domain UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  STAT UniProtKB/TrEMBL
  STAT4 UniProtKB/TrEMBL
  STAT4_CCD UniProtKB/TrEMBL
  STAT4_SH2 UniProtKB/TrEMBL
  STAT_linker UniProtKB/TrEMBL
  STAT_N_sf UniProtKB/TrEMBL
  STAT_TF_alpha UniProtKB/TrEMBL
  STAT_TF_coiled-coil UniProtKB/TrEMBL
  STAT_TF_DNA-bd UniProtKB/TrEMBL
  STAT_TF_DNA-bd_N UniProtKB/TrEMBL
  STAT_TF_prot_interaction UniProtKB/TrEMBL
KEGG Report hgl:101718558 UniProtKB/TrEMBL
NCBI Gene Stat4 ENTREZGENE
PANTHER PTHR11801 UniProtKB/TrEMBL
  PTHR11801:SF19 UniProtKB/TrEMBL
Pfam SH2 UniProtKB/TrEMBL
  STAT_alpha UniProtKB/TrEMBL
  STAT_bind UniProtKB/TrEMBL
  STAT_int UniProtKB/TrEMBL
  STAT_linker UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART STAT_int UniProtKB/TrEMBL
Superfamily-SCOP SSF47655 UniProtKB/TrEMBL
  SSF48092 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A0P6J7T0 ENTREZGENE, UniProtKB/TrEMBL
  G5BGK4 ENTREZGENE, UniProtKB/TrEMBL