Thap7 (THAP domain containing 7) - Rat Genome Database

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Gene: Thap7 (THAP domain containing 7) Heterocephalus glaber
Analyze
Symbol: Thap7
Name: THAP domain containing 7
RGD ID: 18911490
Description: ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); general transcription initiation factor binding (ortholog); histone binding (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog); FOUND IN chromatin (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: THAP domain-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945688,185 - 690,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945687,941 - 690,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Thap7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945688,185 - 690,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945687,941 - 690,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
THAP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,999,104 - 21,002,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,999,104 - 21,002,196 (-)EnsemblGRCh38hg38GRCh38
GRCh372221,353,393 - 21,356,407 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,684,061 - 19,686,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,678,614 - 19,680,958NCBI
Celera224,845,380 - 4,847,723 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,622,333 - 4,624,676 (-)NCBIHuRef
CHM1_12221,354,262 - 21,356,605 (-)NCBICHM1_1
T2T-CHM13v2.02221,407,895 - 21,410,909 (-)NCBIT2T-CHM13v2.0
Thap7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,345,823 - 17,349,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,345,846 - 17,349,000 (-)EnsemblGRCm39 Ensembl
GRCm381617,527,959 - 17,531,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,527,982 - 17,531,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,528,075 - 17,531,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,441,545 - 17,444,615 (-)NCBIMGSCv36mm8
Celera1618,101,087 - 18,104,157 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.86NCBI
Thap7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,986,720 - 96,990,375 (+)NCBIGRCr8
mRatBN7.21183,482,958 - 83,486,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,483,037 - 83,486,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,210,450 - 92,213,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,871,609 - 84,874,710 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,925,217 - 83,928,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,399,430 - 87,403,381 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,399,483 - 87,403,367 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,450,724 - 90,453,825 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,474,475 - 85,477,516 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,508,396 - 85,518,115 (+)NCBI
Celera1182,251,641 - 82,254,742 (+)NCBICelera
Cytogenetic Map11q23NCBI
Thap7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,311,574 - 19,313,779 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,311,307 - 19,313,779 (+)NCBIChiLan1.0ChiLan1.0
THAP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,706,563 - 30,708,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,255,500 - 33,258,634 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,223,789 - 3,226,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,713,740 - 19,716,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,713,740 - 19,716,068 (-)Ensemblpanpan1.1panPan2
THAP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,498,718 - 30,501,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,498,785 - 30,525,906 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,457,172 - 30,459,520 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,907,748 - 31,910,097 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,907,796 - 31,909,999 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,953,397 - 29,955,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,577,606 - 29,579,953 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,666,574 - 30,668,922 (+)NCBIUU_Cfam_GSD_1.0
Thap7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,225,715 - 140,228,910 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366192,525,152 - 2,528,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THAP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,591,410 - 50,594,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,591,412 - 50,593,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,040,150 - 54,042,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THAP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,935,872 - 4,938,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,935,976 - 4,938,152 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,030,881 - 2,033,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000000328   ⟹   ENSHGLP00000000294
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624945688,185 - 690,480 (+)Ensembl
RefSeq Acc Id: XM_004874894   ⟹   XP_004874951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624945687,941 - 690,480 (+)NCBI
RefSeq Acc Id: XM_013069317   ⟹   XP_012924771
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624945687,941 - 690,480 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004874951 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924771 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14895 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000294
  ENSHGLP00000042357
GenBank Protein JAO01097 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004874951   ⟸   XM_004874894
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JER6 (UniProtKB/TrEMBL),   G5C034 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924771   ⟸   XM_013069317
- Peptide Label: isoform X2
- UniProtKB: G5C034 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000294   ⟸   ENSHGLT00000000328


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000288 Ensembl, ENTREZGENE
  ENSHGLG00000038188 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000000328 ENTREZGENE
  ENSHGLT00000084769 UniProtKB/TrEMBL
InterPro THAP7 UniProtKB/TrEMBL
  THAP_Znf UniProtKB/TrEMBL
KEGG Report hgl:101703170 UniProtKB/TrEMBL
NCBI Gene Thap7 ENTREZGENE
PANTHER PTHR47502 UniProtKB/TrEMBL
  THAP DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam THAP UniProtKB/TrEMBL
PROSITE ZF_THAP UniProtKB/TrEMBL
SMART DM3 UniProtKB/TrEMBL
  THAP UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A0P6JER6 ENTREZGENE, UniProtKB/TrEMBL
  G5C034 ENTREZGENE, UniProtKB/TrEMBL