Ctse (cathepsin E) - Rat Genome Database

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Gene: Ctse (cathepsin E) Heterocephalus glaber
Analyze
Symbol: Ctse
Name: cathepsin E
RGD ID: 18911346
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN protein autoprocessing (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,291,736 - 5,305,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,291,993 - 5,306,507 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ctse
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,291,736 - 5,305,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,291,993 - 5,306,507 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CTSE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,009,264 - 206,023,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,008,535 - 206,023,909 (-)EnsemblGRCh38hg38GRCh38
GRCh371206,317,473 - 206,332,104 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,484,082 - 204,498,727 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,116,519 - 179,131,198 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,247,760 - 177,262,405 (+)NCBIHuRef
T2T-CHM13v2.01205,273,263 - 205,287,895 (-)NCBIT2T-CHM13v2.0
Ctse
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,566,052 - 131,603,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,566,044 - 131,603,243 (+)EnsemblGRCm39 Ensembl
GRCm381131,638,314 - 131,675,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,638,306 - 131,675,505 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,534,891 - 133,572,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,465,860 - 133,503,049 (+)NCBIMGSCv36mm8
Celera1134,250,340 - 134,281,876 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.14NCBI
Ctse
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,644,168 - 45,666,722 (+)NCBIGRCr8
mRatBN7.21343,091,954 - 43,114,509 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,092,128 - 43,114,502 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,695,406 - 45,717,865 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,983,544 - 47,006,003 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,248,051 - 44,270,572 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,426,833 - 48,449,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,426,820 - 48,449,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,498,965 - 53,521,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,582,911 - 44,605,241 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,596,953 - 44,619,284 (+)NCBI
Celera1343,430,588 - 43,452,924 (+)NCBICelera
Cytogenetic Map13q13NCBI
Ctse
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,641,311 - 41,653,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,641,412 - 41,653,261 (-)NCBIChiLan1.0ChiLan1.0
CTSE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,346,170 - 43,361,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,311,665 - 43,326,899 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,617,421 - 181,632,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,900,746 - 185,915,368 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,900,746 - 185,915,519 (-)Ensemblpanpan1.1panPan2
CTSE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,368,711 - 2,380,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,369,265 - 2,380,459 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,461,257 - 2,473,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,365,859 - 2,377,730 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,365,857 - 2,377,890 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,359,989 - 2,371,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,751,514 - 2,763,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,952,739 - 2,964,581 (-)NCBIUU_Cfam_GSD_1.0
Ctse
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,245,473 - 69,258,551 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,485,755 - 6,498,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,485,783 - 6,498,805 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTSE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,318,421 - 23,333,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,319,248 - 23,332,980 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,017,015 - 24,031,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004862073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01073757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000005419   ⟹   ENSHGLP00000005349
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248075,291,736 - 5,305,104 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005420   ⟹   ENSHGLP00000005350
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248075,292,094 - 5,303,912 (+)Ensembl
RefSeq Acc Id: XM_004862073   ⟹   XP_004862130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248075,291,993 - 5,306,507 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005349
Reference Protein Sequences
RefSeq Acc Id: XP_004862130   ⟸   XM_004862073
- UniProtKB: G5BX53 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005350   ⟸   ENSHGLT00000005420
RefSeq Acc Id: ENSHGLP00000005349   ⟸   ENSHGLT00000005419


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003917 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005419 ENTREZGENE
Gene3D-CATH 6.10.140.60 UniProtKB/TrEMBL
  Acid Proteases UniProtKB/TrEMBL
InterPro Aspartic_peptidase_A1 UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/TrEMBL
  Aspartic_peptidase_N UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
NCBI Gene Ctse ENTREZGENE
PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED UniProtKB/TrEMBL
  CATHEPSIN E UniProtKB/TrEMBL
Pfam A1_Propeptide UniProtKB/TrEMBL
  Asp UniProtKB/TrEMBL
PRINTS PEPSIN UniProtKB/TrEMBL
PROSITE ASP_PROTEASE UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
Superfamily-SCOP Acid proteases UniProtKB/TrEMBL
UniProt G5BX53 ENTREZGENE, UniProtKB/TrEMBL