Cdh20 (cadherin 20) - Rat Genome Database

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Gene: Cdh20 (cadherin 20) Heterocephalus glaber
Analyze
Symbol: Cdh20
Name: cadherin 20
RGD ID: 18911052
Description: ENCODES a protein that exhibits cadherin binding (inferred); calcium ion binding (inferred); INVOLVED IN adherens junction organization (inferred); calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (inferred); cell adhesion (inferred); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); syndactyly (ortholog); FOUND IN adherens junction (inferred); catenin complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cadherin-20; cadherin-20 preproprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247926,902,931 - 7,159,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247926,903,439 - 7,158,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdh20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247926,902,931 - 7,159,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247926,903,439 - 7,158,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDH20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381861,333,430 - 61,555,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1861,333,430 - 61,555,779 (+)EnsemblGRCh38hg38GRCh38
GRCh371859,000,663 - 59,223,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361857,308,755 - 57,373,345 (+)NCBINCBI36Build 36hg18NCBI36
Build 341857,308,754 - 57,373,345NCBI
Celera1855,875,642 - 55,940,232 (+)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1855,867,814 - 55,931,773 (+)NCBIHuRef
CHM1_11859,153,227 - 59,217,972 (+)NCBICHM1_1
T2T-CHM13v2.01861,536,681 - 61,759,001 (+)NCBIT2T-CHM13v2.0
Cdh20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391104,696,245 - 104,923,202 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1104,696,254 - 104,923,206 (+)EnsemblGRCm39 Ensembl
GRCm381104,768,340 - 104,995,481 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1104,768,529 - 104,995,481 (+)EnsemblGRCm38mm10GRCm38
MGSCv371106,665,396 - 106,892,058 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361106,596,366 - 106,823,028 (+)NCBIMGSCv36mm8
Celera1107,630,046 - 107,857,575 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.42NCBI
Cdh20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81321,252,272 - 21,583,526 (+)NCBIGRCr8
mRatBN7.21320,737,640 - 21,069,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1320,738,081 - 21,068,676 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1321,347,754 - 21,410,721 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01322,632,507 - 22,695,474 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,316,387 - 21,379,354 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01324,630,298 - 24,914,463 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1324,823,488 - 24,913,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01330,018,338 - 30,085,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41310,970,187 - 11,038,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11310,970,186 - 11,038,946 (+)NCBI
Celera1320,896,704 - 20,961,175 (+)NCBICelera
Cytogenetic Map13p11NCBI
Cdh20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540245,340,223 - 45,543,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540245,340,824 - 45,543,088 (+)NCBIChiLan1.0ChiLan1.0
CDH20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21778,858,063 - 79,080,155 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11864,550,654 - 64,772,871 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01854,706,558 - 54,928,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11858,028,849 - 58,250,790 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1858,028,533 - 58,250,790 (+)Ensemblpanpan1.1panPan2
CDH20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1115,172,681 - 15,388,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl115,183,350 - 15,234,880 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha116,150,908 - 16,202,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0115,054,279 - 15,259,002 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl115,054,288 - 15,106,347 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1115,079,685 - 15,131,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0115,014,314 - 15,066,051 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0115,260,942 - 15,312,507 (-)NCBIUU_Cfam_GSD_1.0
Cdh20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494428,387,140 - 28,587,898 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364973,625,601 - 3,699,564 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364973,626,181 - 3,827,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,817,159 - 159,917,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11159,817,091 - 160,024,985 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21177,316,697 - 177,367,332 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11818,207,407 - 18,426,620 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1818,207,415 - 18,269,551 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660607,259,763 - 7,481,337 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004858431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021239250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021239251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021239252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01066129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01066141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000026948   ⟹   ENSHGLP00000026711
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247926,902,931 - 7,159,514 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000026949   ⟹   ENSHGLP00000026712
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247927,089,017 - 7,159,514 (+)Ensembl
RefSeq Acc Id: XM_004858431   ⟹   XP_004858488
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247927,098,007 - 7,158,708 (+)NCBI
RefSeq Acc Id: XM_021239250   ⟹   XP_021094909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247926,903,439 - 7,158,345 (+)NCBI
RefSeq Acc Id: XM_021239251   ⟹   XP_021094910
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247926,903,476 - 7,158,345 (+)NCBI
RefSeq Acc Id: XM_021239252   ⟹   XP_021094911
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247927,089,023 - 7,158,345 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004858488 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094909 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094910 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094911 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16262 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026711
  ENSHGLP00000026712
  ENSHGLP00100005853
GenBank Protein JAN97576 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021094909   ⟸   XM_021239250
- UniProtKB: A0A0P6J4V5 (UniProtKB/TrEMBL),   G5C401 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094910   ⟸   XM_021239251
- UniProtKB: A0A0P6J4V5 (UniProtKB/TrEMBL),   G5C401 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094911   ⟸   XM_021239252
- UniProtKB: A0A0P6J4V5 (UniProtKB/TrEMBL),   G5C401 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858488   ⟸   XM_004858431
- UniProtKB: A0A0P6J4V5 (UniProtKB/TrEMBL),   G5C401 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026711   ⟸   ENSHGLT00000026948
RefSeq Acc Id: ENSHGLP00000026712   ⟸   ENSHGLT00000026949


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019001 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100004423 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026948 ENTREZGENE
  ENSHGLT00000026949 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100005936 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
KEGG Report hgl:101726325 UniProtKB/TrEMBL
NCBI Gene Cdh20 ENTREZGENE
PANTHER CADHERIN-20 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0P6J4V5 ENTREZGENE, UniProtKB/TrEMBL
  G5C401 ENTREZGENE, UniProtKB/TrEMBL