Slc35d1 (solute carrier family 35 member D1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc35d1 (solute carrier family 35 member D1) Heterocephalus glaber
Analyze
Symbol: Slc35d1
Name: solute carrier family 35 member D1
RGD ID: 18911047
Description: ENCODES a protein that exhibits pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); embryonic skeletal system development (ortholog); pyrimidine nucleotide-sugar transmembrane transport (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474228,008,656 - 28,037,921 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474228,008,637 - 28,039,246 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc35d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474228,008,656 - 28,037,921 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474228,008,637 - 28,039,246 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC35D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,972,976 - 67,054,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,999,350 - 67,054,148 (-)EnsemblGRCh38hg38GRCh38
GRCh37167,465,033 - 67,519,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,242,439 - 67,292,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 34167,181,871 - 67,231,749NCBI
Celera165,754,958 - 65,810,053 (-)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,573,672 - 65,628,761 (-)NCBIHuRef
CHM1_1167,580,377 - 67,635,467 (-)NCBICHM1_1
T2T-CHM13v2.0166,850,468 - 66,931,662 (-)NCBIT2T-CHM13v2.0
Slc35d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394103,027,846 - 103,078,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4103,027,846 - 103,072,361 (-)EnsemblGRCm39 Ensembl
GRCm384103,170,649 - 103,222,269 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,170,649 - 103,215,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv374102,844,323 - 102,887,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,669,650 - 102,712,816 (-)NCBIMGSCv36mm8
Celera4101,536,380 - 101,579,459 (-)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.43NCBI
Slc35d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85123,157,739 - 123,210,350 (-)NCBIGRCr8
mRatBN7.25117,928,628 - 117,981,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,934,352 - 117,981,311 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,567,104 - 120,619,582 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,292,459 - 122,344,939 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,343,725 - 122,396,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,700,396 - 122,746,815 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,699,587 - 122,746,839 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,565,916 - 126,612,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45124,107,948 - 124,154,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15124,114,877 - 124,159,322 (-)NCBI
Celera5116,506,110 - 116,552,595 (-)NCBICelera
Cytogenetic Map5q33NCBI
Slc35d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542323,945,572 - 23,967,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542323,945,729 - 23,969,929 (+)NCBIChiLan1.0ChiLan1.0
SLC35D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,805,696 - 159,860,753 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,965,869 - 159,020,934 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,248,462 - 66,303,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1168,133,647 - 68,188,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl168,134,617 - 68,188,694 (-)Ensemblpanpan1.1panPan2
SLC35D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,474,641 - 43,522,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,474,674 - 43,522,042 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha543,605,848 - 43,646,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0543,660,195 - 43,707,778 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,660,222 - 43,707,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,626,120 - 43,673,701 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,572,080 - 43,619,644 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0543,812,270 - 43,859,859 (+)NCBIUU_Cfam_GSD_1.0
Slc35d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,914,628 - 79,957,792 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365914,531,403 - 4,570,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365914,519,136 - 4,574,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,533,537 - 145,596,066 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16145,532,600 - 145,596,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26134,374,868 - 134,383,870 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,055,933 - 66,114,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,056,924 - 66,109,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603351,480,961 - 51,538,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010446   ⟹   ENSHGLP00000010331
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474228,008,656 - 28,037,921 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010447   ⟹   ENSHGLP00000010332
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474228,008,872 - 28,037,899 (+)Ensembl
RefSeq Acc Id: XM_004841492   ⟹   XP_004841549
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474228,008,648 - 28,039,246 (+)NCBI
RefSeq Acc Id: XM_013070975   ⟹   XP_012926429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474228,008,637 - 28,030,767 (+)NCBI
RefSeq Acc Id: XM_021255563   ⟹   XP_021111222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474228,008,637 - 28,030,767 (+)NCBI
RefSeq Acc Id: XM_021255564   ⟹   XP_021111223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474228,009,341 - 28,030,767 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004841549 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926429 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111222 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111223 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010331
Reference Protein Sequences
RefSeq Acc Id: XP_012926429   ⟸   XM_013070975
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021111222   ⟸   XM_021255563
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004841549   ⟸   XM_004841492
- Peptide Label: isoform X3
- UniProtKB: G5BSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111223   ⟸   XM_021255564
- Peptide Label: isoform X4
- UniProtKB: G5BSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010331   ⟸   ENSHGLT00000010446
RefSeq Acc Id: ENSHGLP00000010332   ⟸   ENSHGLT00000010447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007417 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010446 ENTREZGENE
InterPro Sugar_P_trans_dom UniProtKB/TrEMBL
NCBI Gene Slc35d1 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  UDP-GLUCURONIC ACID/UDP-N-ACETYLGALACTOSAMINE TRANSPORTER UniProtKB/TrEMBL
Pfam TPT UniProtKB/TrEMBL
UniProt G5BSQ0 ENTREZGENE, UniProtKB/TrEMBL