Dnaaf11 (dynein axonemal assembly factor 11) - Rat Genome Database

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Gene: Dnaaf11 (dynein axonemal assembly factor 11) Heterocephalus glaber
Analyze
Symbol: Dnaaf11
Name: dynein axonemal assembly factor 11 (Ensembl:leucine rich repeat containing 6)
RGD ID: 18910836
Description: INVOLVED IN axonemal dynein complex assembly (ortholog); cerebrospinal fluid circulation (ortholog); cilium movement (ortholog); ASSOCIATED WITH benign neonatal seizures (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN apical cytoplasm (ortholog); cilium (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine rich repeat containing 6; Lrrc6; protein TILB homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,269,414 - 23,355,968 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,269,253 - 23,355,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dnaaf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,269,414 - 23,355,968 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,269,253 - 23,355,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DNAAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,570,416 - 132,702,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,570,416 - 132,675,592 (-)EnsemblGRCh38hg38GRCh38
GRCh378133,582,664 - 133,687,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,653,629 - 133,756,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 348133,653,630 - 133,756,995NCBI
Celera8129,759,252 - 129,862,622 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8128,902,733 - 129,006,332 (-)NCBIHuRef
CHM1_18133,624,994 - 133,728,649 (-)NCBICHM1_1
T2T-CHM13v2.08133,693,703 - 133,826,388 (-)NCBIT2T-CHM13v2.0
Dnaaf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,251,707 - 66,372,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,251,707 - 66,372,759 (-)EnsemblGRCm39 Ensembl
GRCm381566,379,858 - 66,500,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,379,858 - 66,500,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,211,420 - 66,332,472 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,209,527 - 66,330,510 (-)NCBIMGSCv36mm8
Celera1567,903,643 - 68,032,794 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.22NCBI
Dnaaf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,033,843 - 100,134,979 (-)NCBIGRCr8
mRatBN7.2798,141,525 - 98,245,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,144,763 - 98,245,837 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx799,899,274 - 100,006,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,100,939 - 102,208,084 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,020,292 - 102,127,442 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,130,402 - 107,231,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,130,402 - 107,223,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,073,711 - 107,174,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,265,345 - 107,276,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,747,640 - 103,851,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,698,248 - 94,798,326 (-)NCBICelera
Cytogenetic Map7q33NCBI
Dnaaf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,204,339 - 7,312,241 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,204,165 - 7,311,524 (-)NCBIChiLan1.0ChiLan1.0
DNAAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27149,957,976 - 150,063,701 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,472,529 - 125,578,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,223,591 - 129,329,535 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,199,607 - 132,305,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,199,607 - 132,305,351 (-)Ensemblpanpan1.1panPan2
DNAAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,128,500 - 29,199,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,128,504 - 29,199,323 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,101,416 - 29,172,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,482,884 - 29,553,592 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,482,877 - 29,553,561 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,209,949 - 29,280,586 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,309,966 - 29,380,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,622,148 - 29,692,826 (-)NCBIUU_Cfam_GSD_1.0
Dnaaf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,131,239 - 9,214,410 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,557,371 - 16,640,553 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,557,381 - 16,640,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,532,739 - 8,608,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,531,612 - 8,605,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,570,672 - 8,644,007 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAAF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,010,303 - 127,103,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,008,619 - 127,103,300 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603913,003,355 - 13,096,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010949   ⟹   ENSHGLP00000010827
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473523,269,414 - 23,355,968 (+)Ensembl
RefSeq Acc Id: XM_004837929   ⟹   XP_004837986
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,263 - 23,355,832 (+)NCBI
RefSeq Acc Id: XM_013069599   ⟹   XP_012925053
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,253 - 23,355,832 (+)NCBI
RefSeq Acc Id: XM_013069600   ⟹   XP_012925054
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,268 - 23,355,832 (+)NCBI
RefSeq Acc Id: XM_013069601   ⟹   XP_012925055
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,254 - 23,355,832 (+)NCBI
RefSeq Acc Id: XM_013069602   ⟹   XP_012925056
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,277 - 23,355,832 (+)NCBI
RefSeq Acc Id: XM_021251919   ⟹   XP_021107578
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473523,269,264 - 23,353,941 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012925053   ⟸   XM_013069599
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012925055   ⟸   XM_013069601
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004837986   ⟸   XM_004837929
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021107578   ⟸   XM_021251919
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012925054   ⟸   XM_013069600
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012925056   ⟸   XM_013069602
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000010827   ⟸   ENSHGLT00000010949


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007769 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010949 ENTREZGENE
NCBI Gene Lrrc6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Dnaaf11  dynein axonemal assembly factor 11  Lrrc6  leucine rich repeat containing 6  Symbol and/or name change 5135510 APPROVED