Pebp1 (phosphatidylethanolamine binding protein 1) - Rat Genome Database

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Gene: Pebp1 (phosphatidylethanolamine binding protein 1) Heterocephalus glaber
Analyze
Symbol: Pebp1
Name: phosphatidylethanolamine binding protein 1
RGD ID: 18910834
Description: ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); kinase binding (ortholog); INVOLVED IN eating behavior (ortholog); hippocampus development (ortholog); MAPK cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylethanolamine-binding protein 1; phosphatidylethanolamine-binding protein 1 preproprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474715,339,844 - 15,346,970 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474715,340,020 - 15,346,960 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pebp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474715,339,844 - 15,346,970 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474715,340,020 - 15,346,960 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PEBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812118,136,124 - 118,145,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12118,136,124 - 118,145,584 (+)EnsemblGRCh38hg38GRCh38
GRCh3712118,573,929 - 118,583,389 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612117,058,253 - 117,067,773 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412117,036,589 - 117,046,110NCBI
Celera12118,204,960 - 118,214,471 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12115,583,844 - 115,593,353 (+)NCBIHuRef
CHM1_112118,541,591 - 118,551,104 (+)NCBICHM1_1
T2T-CHM13v2.012118,123,375 - 118,132,824 (+)NCBIT2T-CHM13v2.0
Pebp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395117,420,716 - 117,425,629 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5117,420,719 - 117,425,690 (-)EnsemblGRCm39 Ensembl
GRCm385117,282,651 - 117,287,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5117,282,654 - 117,287,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv375117,732,660 - 117,737,573 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365117,543,681 - 117,548,594 (-)NCBIMGSCv36mm8
Celera5114,378,177 - 114,383,080 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.88NCBI
Pebp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,946,307 - 44,967,890 (+)NCBIGRCr8
mRatBN7.21239,302,864 - 39,307,064 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,302,840 - 39,307,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,478,140 - 40,482,340 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01241,091,959 - 41,096,159 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01240,144,930 - 40,149,130 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01245,026,948 - 45,031,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1245,026,886 - 45,031,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,846,901 - 46,851,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,491,393 - 40,495,593 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11240,354,780 - 40,358,980 (+)NCBI
Celera1240,944,260 - 40,948,460 (+)NCBICelera
Cytogenetic Map12q16NCBI
Pebp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545513,217,012 - 13,222,370 (-)NCBIChiLan1.0ChiLan1.0
PEBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210126,202,444 - 126,211,940 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112126,198,824 - 126,208,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012115,716,953 - 115,726,412 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112119,096,328 - 119,105,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12119,093,952 - 119,105,054 (+)Ensemblpanpan1.1panPan2
PEBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12614,522,124 - 14,526,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2614,500,074 - 14,529,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2614,515,188 - 14,519,426 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02614,784,007 - 14,788,255 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2614,778,114 - 14,791,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12614,748,852 - 14,753,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02614,821,104 - 14,825,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02614,856,217 - 14,860,448 (+)NCBIUU_Cfam_GSD_1.0
Pebp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118147,817,772 - 147,824,111 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366682,316,661 - 2,323,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11434,523,901 - 34,530,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21436,685,085 - 36,691,392 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111113,469,845 - 113,479,177 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037131,619,275 - 131,630,575 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015132   ⟹   ENSHGLP00000014982
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474715,339,844 - 15,346,970 (-)Ensembl
RefSeq Acc Id: XM_004843694   ⟹   XP_004843751
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474715,340,020 - 15,346,960 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014982
  ENSHGLP00100025513
GenBank Protein JAN96075 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004843751   ⟸   XM_004843694
- UniProtKB: A0A0P6IWS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014982   ⟸   ENSHGLT00000015132


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010723 Ensembl, ENTREZGENE
  ENSHGLG00100018712 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015132 ENTREZGENE
  ENSHGLT00100025774 UniProtKB/TrEMBL
Gene3D-CATH 3.90.280.10 UniProtKB/TrEMBL
InterPro PEBP UniProtKB/TrEMBL
  PEBP-like_sf UniProtKB/TrEMBL
  PEBP_euk UniProtKB/TrEMBL
  Phosphatidylethanolamine-bd_CS UniProtKB/TrEMBL
KEGG Report hgl:101708164 UniProtKB/TrEMBL
NCBI Gene Pebp1 ENTREZGENE
PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR11362 UniProtKB/TrEMBL
Pfam PBP UniProtKB/TrEMBL
PROSITE PBP UniProtKB/TrEMBL
Superfamily-SCOP SSF49777 UniProtKB/TrEMBL
UniProt A0A0P6IWS9 ENTREZGENE, UniProtKB/TrEMBL