Impg1 (interphotoreceptor matrix proteoglycan 1) - Rat Genome Database

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Gene: Impg1 (interphotoreceptor matrix proteoglycan 1) Heterocephalus glaber
Analyze
Symbol: Impg1
Name: interphotoreceptor matrix proteoglycan 1
RGD ID: 18910553
Description: INVOLVED IN extracellular matrix organization (ortholog); ASSOCIATED WITH Concentric Annular Macular Dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN interphotoreceptor matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248193,002,718 - 3,030,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Impg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248193,002,718 - 3,030,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IMPG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,921,114 - 76,072,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,921,114 - 76,072,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37676,630,831 - 76,782,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,687,782 - 76,839,055 (-)NCBINCBI36Build 36hg18NCBI36
Build 34676,687,781 - 76,839,055NCBI
Celera677,024,393 - 77,175,569 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,829,832 - 73,981,002 (-)NCBIHuRef
CHM1_1676,797,312 - 76,948,513 (-)NCBICHM1_1
T2T-CHM13v2.0677,097,995 - 77,249,656 (-)NCBIT2T-CHM13v2.0
Impg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39980,215,467 - 80,347,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl980,220,612 - 80,347,534 (-)EnsemblGRCm39 Ensembl
GRCm38980,312,773 - 80,465,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl980,313,330 - 80,465,481 (-)EnsemblGRCm38mm10GRCm38
MGSCv37980,328,600 - 80,359,045 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37980,161,137 - 80,252,614 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36980,098,771 - 80,190,491 (-)NCBIMGSCv36mm8
Celera977,456,948 - 77,581,047 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.99NCBI
Impg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8890,123,821 - 90,269,903 (-)NCBIGRCr8
mRatBN7.2881,243,624 - 81,389,722 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl881,243,624 - 81,389,722 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,771,096 - 86,917,445 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0885,048,238 - 85,194,590 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,870,882 - 83,017,048 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,733,374 - 87,879,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,733,545 - 87,879,888 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0887,271,174 - 87,416,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4885,372,670 - 85,523,184 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1885,392,124 - 85,513,426 (-)NCBI
Celera880,965,165 - 81,108,510 (-)NCBICelera
Cytogenetic Map8q31NCBI
Impg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555024,359,071 - 4,502,623 (-)NCBIChiLan1.0ChiLan1.0
IMPG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,969,739 - 96,096,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,850,408 - 93,977,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,765,927 - 73,892,918 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1677,054,893 - 77,180,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl677,055,866 - 77,211,813 (-)Ensemblpanpan1.1panPan2
IMPG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11237,506,511 - 37,614,683 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1237,507,525 - 37,638,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1237,386,127 - 37,500,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01238,291,434 - 38,405,667 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1238,292,450 - 38,423,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11237,614,190 - 37,728,097 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01237,604,075 - 37,718,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01237,733,410 - 37,847,683 (-)NCBIUU_Cfam_GSD_1.0
Impg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,886,398 - 73,019,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367881,268,614 - 1,401,998 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367881,258,547 - 1,401,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IMPG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl189,836,050 - 89,987,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1189,836,013 - 89,986,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21100,849,075 - 100,966,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IMPG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.113624,694 - 783,466 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl13625,891 - 750,525 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,929,491 - 177,077,167 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021243783   ⟹   XP_021099442
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248193,002,718 - 3,030,007 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021099442 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97767 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021099442   ⟸   XM_021243783


Additional Information

Database Acc Id Source(s)
NCBI Gene Impg1 ENTREZGENE