Cytl1 (cytokine like 1) - Rat Genome Database

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Gene: Cytl1 (cytokine like 1) Heterocephalus glaber
Analyze
Symbol: Cytl1
Name: cytokine like 1
RGD ID: 18910356
Description: INVOLVED IN cartilage homeostasis (ortholog); chondrocyte differentiation (ortholog); chondroitin sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog); tooth and nail syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytokine-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,968,570 - 21,973,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,968,360 - 21,972,986 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cytl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,968,570 - 21,973,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,968,360 - 21,972,986 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CYTL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3845,014,586 - 5,019,458 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl45,014,586 - 5,019,458 (-)EnsemblGRCh38hg38GRCh38
GRCh3745,016,313 - 5,021,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3645,067,214 - 5,072,098 (-)NCBINCBI36Build 36hg18NCBI36
Build 3445,134,387 - 5,139,269NCBI
Celera44,913,525 - 4,918,414 (-)NCBICelera
Cytogenetic Map4p16.2NCBI
HuRef44,952,728 - 4,957,617 (-)NCBIHuRef
CHM1_145,014,307 - 5,019,195 (-)NCBICHM1_1
T2T-CHM13v2.044,984,228 - 4,989,105 (-)NCBIT2T-CHM13v2.0
Cytl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,892,863 - 37,897,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,892,863 - 37,897,164 (+)EnsemblGRCm39 Ensembl
GRCm38537,735,519 - 37,739,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,735,519 - 37,739,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,126,758 - 38,131,059 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,023,768 - 38,028,069 (+)NCBIMGSCv36mm8
Celera535,191,397 - 35,195,691 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.21NCBI
Cytl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,278,635 - 77,283,645 (-)NCBIGRCr8
mRatBN7.21473,053,876 - 73,058,886 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,053,877 - 73,058,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,508,028 - 77,513,034 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,748,888 - 78,753,890 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,189,427 - 75,194,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,805,137 - 77,810,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,805,130 - 77,810,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,783,865 - 77,788,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41478,349,878 - 78,354,888 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1472,016,197 - 72,021,228 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cytl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555144,826,755 - 4,831,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555144,826,792 - 4,831,424 (+)NCBIChiLan1.0ChiLan1.0
CYTL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v235,280,955 - 5,286,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan145,214,116 - 5,219,213 (-)NCBINHGRI_mPanPan1
PanPan1.145,092,567 - 5,097,456 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl45,092,144 - 5,098,092 (-)Ensemblpanpan1.1panPan2
CYTL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1370,354,099 - 70,358,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl370,354,090 - 70,359,128 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,904,811 - 72,909,240 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,113,282 - 71,117,712 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,113,283 - 71,117,907 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1370,384,321 - 70,388,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0370,544,734 - 70,549,165 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,929,545 - 70,933,976 (-)NCBIUU_Cfam_GSD_1.0
Cytl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,807,132 - 63,813,091 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647717,508,823 - 17,512,663 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647717,508,833 - 17,512,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl85,455,671 - 5,460,861 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.185,455,576 - 5,460,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.285,266,914 - 5,272,133 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYTL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12741,187,925 - 41,192,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2741,187,828 - 41,192,690 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604787,982,211 - 87,987,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005905   ⟹   ENSHGLP00000005832
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475521,968,570 - 21,973,397 (-)Ensembl
RefSeq Acc Id: XM_004847304   ⟹   XP_004847361
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475521,968,360 - 21,972,986 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847361 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005832
  ENSHGLP00000034651
GenBank Protein JAN96883 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847361   ⟸   XM_004847304
- UniProtKB: A0A0P6K1M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005832   ⟸   ENSHGLT00000005905


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004256 Ensembl, ENTREZGENE
  ENSHGLG00000043228 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005905 ENTREZGENE
  ENSHGLT00000077101 UniProtKB/TrEMBL
InterPro CYTL1 UniProtKB/TrEMBL
KEGG Report hgl:101707204 UniProtKB/TrEMBL
NCBI Gene Cytl1 ENTREZGENE
PANTHER CYTOKINE-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR15974 UniProtKB/TrEMBL
Pfam CYTL1 UniProtKB/TrEMBL
UniProt A0A0P6K1M3 ENTREZGENE, UniProtKB/TrEMBL