Chchd10 (coiled-coil-helix-coiled-coil-helix domain containing 10) - Rat Genome Database

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Gene: Chchd10 (coiled-coil-helix-coiled-coil-helix domain containing 10) Heterocephalus glaber
Analyze
Symbol: Chchd10
Name: coiled-coil-helix-coiled-coil-helix domain containing 10
RGD ID: 18910201
Description: INVOLVED IN maintenance of protein location in nucleus (inferred); maintenance of synapse structure (inferred); mitochondria-nucleus signaling pathway (inferred); ASSOCIATED WITH agammaglobulinemia 2 (ortholog); amyotrophic lateral sclerosis (ortholog); epilepsy (ortholog); FOUND IN MICOS complex (inferred); mitochondrial intermembrane space (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,412,012 - 10,413,969 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,411,933 - 10,413,969 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Chchd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,412,012 - 10,413,969 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,411,933 - 10,413,969 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CHCHD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,765,834 - 23,767,972 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,765,834 - 23,767,972 (-)EnsemblGRCh38hg38GRCh38
GRCh372224,108,021 - 24,110,159 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,438,021 - 22,440,141 (-)NCBINCBI36Build 36hg18NCBI36
Build 342222,432,575 - 22,434,695NCBI
Celera227,947,114 - 7,949,233 (-)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,096,091 - 7,098,209 (-)NCBIHuRef
CHM1_12224,120,261 - 24,122,381 (-)NCBICHM1_1
T2T-CHM13v2.02224,213,028 - 24,215,165 (-)NCBIT2T-CHM13v2.0
Chchd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,768,964 - 75,773,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,768,964 - 75,773,581 (+)EnsemblGRCm39 Ensembl
GRCm381075,933,130 - 75,937,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,933,130 - 75,937,747 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,398,318 - 75,400,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,379,289 - 75,381,450 (+)NCBIMGSCv36mm8
Celera1076,980,258 - 76,982,419 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.62NCBI
Chchd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,725,274 - 12,730,295 (-)NCBIGRCr8
mRatBN7.22012,725,839 - 12,727,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,725,842 - 12,732,763 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,432,473 - 13,434,272 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,793,393 - 12,795,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,265,186 - 13,266,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,665,046 - 13,666,845 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,665,031 - 13,667,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,820,609 - 15,822,408 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42013,124,662 - 13,126,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12013,124,889 - 13,126,688 (-)NCBI
Celera2014,217,149 - 14,218,873 (-)NCBICelera
Cytogenetic Map20p12NCBI
Chchd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,472,833 - 8,479,129 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,472,833 - 8,474,745 (+)NCBIChiLan1.0ChiLan1.0
CHCHD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,497,453 - 33,500,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,233,958 - 36,236,617 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,521,604 - 4,523,740 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,606,921 - 22,608,605 (-)NCBIpanpan1.1PanPan1.1panPan2
CHCHD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,742,466 - 28,744,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,742,526 - 28,744,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,815,913 - 27,817,710 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,147,725 - 30,149,550 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,146,627 - 30,149,549 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,228,867 - 28,230,698 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,846,836 - 27,848,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,834,674 - 28,836,505 (+)NCBIUU_Cfam_GSD_1.0
Chchd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,428,540 - 141,430,468 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366191,323,246 - 1,325,522 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366191,323,247 - 1,325,520 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,921,595 - 49,923,526 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,921,600 - 49,923,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,363,915 - 53,365,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,882,007 - 6,884,176 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,878,662 - 6,884,655 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666100488,809 - 490,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026608   ⟹   ENSHGLP00000026373
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474710,412,012 - 10,413,969 (+)Ensembl
RefSeq Acc Id: XM_004843585   ⟹   XP_004843642
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474710,412,014 - 10,413,969 (+)NCBI
RefSeq Acc Id: XM_021257289   ⟹   XP_021112948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474710,411,933 - 10,413,969 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843642 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112948 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04755 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026373
  ENSHGLP00000034573
  ENSHGLP00100058263
GenBank Protein JAN99272 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021112948   ⟸   XM_021257289
RefSeq Acc Id: XP_004843642   ⟸   XM_004843585
RefSeq Acc Id: ENSHGLP00000026373   ⟸   ENSHGLT00000026608


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018767 Ensembl, ENTREZGENE
  ENSHGLG00000037941 UniProtKB/TrEMBL
  ENSHGLG00100035549 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026608 ENTREZGENE
  ENSHGLT00000042476 UniProtKB/TrEMBL
  ENSHGLT00100045400 UniProtKB/TrEMBL
InterPro CHCH UniProtKB/TrEMBL
NCBI Gene Chchd10 ENTREZGENE
PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 UniProtKB/TrEMBL
  COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 10, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam CHCH UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
UniProt G5B644_HETGA UniProtKB/TrEMBL