Hibch (3-hydroxyisobutyryl-CoA hydrolase) - Rat Genome Database

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Gene: Hibch (3-hydroxyisobutyryl-CoA hydrolase) Heterocephalus glaber
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Symbol: Hibch
Name: 3-hydroxyisobutyryl-CoA hydrolase
RGD ID: 18910157
Description: ENCODES a protein that exhibits 3-hydroxyisobutyryl-CoA hydrolase activity (inferred); hydrolase activity (inferred); INVOLVED IN branched-chain amino acid catabolic process (inferred); valine catabolic process (inferred); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Beta-Hydroxyisobutyryl CoA Deacylase Deficiency (ortholog); genetic disease (ortholog); immunodeficiency 31B (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248545,705,044 - 5,769,628 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248545,705,067 - 5,770,145 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hibch
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248545,705,044 - 5,769,628 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248545,705,067 - 5,770,145 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HIBCH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382190,189,735 - 190,319,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2190,189,735 - 190,344,193 (-)EnsemblGRCh38hg38GRCh38
GRCh372191,068,646 - 191,184,552 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362190,777,605 - 190,892,804 (-)NCBINCBI36Build 36hg18NCBI36
Build 342190,894,866 - 191,010,065NCBI
Celera2184,664,402 - 184,779,775 (-)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2182,929,253 - 183,044,631 (-)NCBIHuRef
CHM1_12191,075,217 - 191,190,581 (-)NCBICHM1_1
T2T-CHM13v2.02190,693,510 - 190,809,397 (-)NCBIT2T-CHM13v2.0
Hibch
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,884,197 - 52,960,145 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl152,884,088 - 52,960,145 (+)EnsemblGRCm39 Ensembl
GRCm38152,845,038 - 52,920,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,844,929 - 52,920,986 (+)EnsemblGRCm38mm10GRCm38
MGSCv37152,901,890 - 52,977,704 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36152,789,591 - 52,865,405 (+)NCBIMGSCv36mm8
Celera153,386,006 - 53,461,488 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
Hibch
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8956,082,082 - 56,161,796 (-)NCBIGRCr8
mRatBN7.2948,590,097 - 48,669,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,590,099 - 48,669,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx957,131,763 - 57,211,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0962,254,592 - 62,334,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,550,578 - 60,630,667 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,446,185 - 53,526,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,446,194 - 53,526,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0953,112,579 - 53,193,190 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,564,702 - 45,645,252 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1945,566,124 - 45,624,624 (-)NCBI
Celera946,259,906 - 46,339,124 (-)NCBICelera
Cytogenetic Map9q22NCBI
Hibch
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554038,752,309 - 8,792,927 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,752,339 - 8,796,693 (+)NCBIChiLan1.0ChiLan1.0
HIBCH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,896,951 - 93,041,587 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,911,935 - 93,053,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,510,938 - 77,652,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,429,787 - 195,544,564 (-)NCBIpanpan1.1PanPan1.1panPan2
HIBCH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.137841,385 - 943,972 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl37841,414 - 943,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,797,343 - 1,893,653 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.037735,664 - 832,314 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl37735,666 - 832,320 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.137746,020 - 842,670 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037713,636 - 809,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.037742,338 - 838,606 (-)NCBIUU_Cfam_GSD_1.0
Hibch
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303148,955,211 - 149,026,449 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365067,811,600 - 7,882,642 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365067,811,624 - 7,882,861 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIBCH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,792,985 - 94,941,266 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,795,744 - 94,941,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,964,875 - 105,973,529 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIBCH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11075,711,829 - 75,852,055 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1075,715,996 - 75,828,310 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040123,643,515 - 123,757,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000003185   ⟹   ENSHGLP00000003130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248545,705,044 - 5,769,628 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000003186   ⟹   ENSHGLP00000003131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248545,717,519 - 5,769,628 (+)Ensembl
RefSeq Acc Id: XM_004868982   ⟹   XP_004869039
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248545,705,070 - 5,770,145 (+)NCBI
RefSeq Acc Id: XR_002390593
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248545,705,067 - 5,770,145 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003130
  ENSHGLP00000032055
  ENSHGLP00100031697
GenBank Protein JAN98124 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004869039   ⟸   XM_004868982
- UniProtKB: A0A0P6J692 (UniProtKB/TrEMBL),   G5BGL1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003130   ⟸   ENSHGLT00000003185
RefSeq Acc Id: ENSHGLP00000003131   ⟸   ENSHGLT00000003186


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011182 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003185 ENTREZGENE
  ENSHGLT00000059224 UniProtKB/TrEMBL
  ENSHGLT00100075655 UniProtKB/TrEMBL
InterPro ClpP/crotonase-like_dom_sf UniProtKB/TrEMBL
  ECH_dom UniProtKB/TrEMBL
  HIBYL-CoA-H UniProtKB/TrEMBL
KEGG Report hgl:101725904 UniProtKB/TrEMBL
NCBI Gene Hibch ENTREZGENE
PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR43176 UniProtKB/TrEMBL
Pfam ECH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52096 UniProtKB/TrEMBL
UniProt A0A0P6J692 ENTREZGENE, UniProtKB/TrEMBL
  G5BGL1 ENTREZGENE, UniProtKB/TrEMBL