Bpifa1 (BPI fold containing family A member 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Bpifa1 (BPI fold containing family A member 1) Heterocephalus glaber
Analyze
Symbol: Bpifa1
Name: BPI fold containing family A member 1
RGD ID: 18910147
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN killing of cells of another organism (ortholog); multicellular organismal-level water homeostasis (ortholog); positive regulation of acute inflammatory response (ortholog); ASSOCIATED WITH fetal alcohol spectrum disorder (ortholog); glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); FOUND IN extracellular space (ortholog); microvillus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BPI fold-containing family A member 1; Protein Plunc
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,024,460 - 6,031,718 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bpifa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,024,460 - 6,031,718 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BPIFA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,235,996 - 33,243,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,235,995 - 33,243,311 (+)EnsemblGRCh38hg38GRCh38
GRCh372031,823,802 - 31,831,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,287,463 - 31,294,773 (+)NCBINCBI36Build 36hg18NCBI36
Build 342031,287,462 - 31,294,772NCBI
Celera2028,577,699 - 28,585,012 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,611,406 - 28,618,725 (+)NCBIHuRef
CHM1_12031,724,914 - 31,732,227 (+)NCBICHM1_1
T2T-CHM13v2.02034,963,235 - 34,970,520 (+)NCBIT2T-CHM13v2.0
Bpifa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,984,800 - 153,991,137 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,984,800 - 153,991,139 (+)EnsemblGRCm39 Ensembl
GRCm382154,142,880 - 154,149,217 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,142,880 - 154,149,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,968,616 - 153,974,953 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,834,326 - 153,840,658 (+)NCBIMGSCv36mm8
Celera2160,065,103 - 160,071,425 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.15NCBI
Bpifa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,087,965 - 163,093,708 (+)NCBIGRCr8
mRatBN7.23142,627,810 - 142,633,553 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,627,810 - 142,633,552 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3146,529,706 - 146,535,449 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,113,544 - 155,119,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,853,782 - 152,859,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,624,867 - 149,630,610 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,624,712 - 149,630,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,002,440 - 156,008,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,529,855 - 144,535,598 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13144,435,476 - 144,441,219 (+)NCBI
Celera3141,369,225 - 141,374,968 (+)NCBICelera
Cytogenetic Map3q41NCBI
Bpifa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542228,063,077 - 28,069,939 (-)NCBIChiLan1.0ChiLan1.0
BPIFA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,929,074 - 38,936,568 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,922,172 - 38,929,666 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,524,619 - 29,532,996 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,641,138 - 30,649,515 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,642,191 - 30,649,515 (+)Ensemblpanpan1.1panPan2
BPIFA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,475,407 - 22,482,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,457,631 - 22,482,661 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,121,008 - 22,128,270 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02423,161,382 - 23,168,638 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2423,160,932 - 23,168,633 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,436,703 - 22,443,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,546,960 - 22,554,221 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,978,118 - 22,985,370 (+)NCBIUU_Cfam_GSD_1.0
BPIFA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,754,498 - 36,761,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,754,498 - 36,761,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,704,827 - 41,711,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPIFA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,571,577 - 37,579,529 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,573,837 - 37,578,667 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,321,049 - 89,329,502 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021246909   ⟹   XP_021102568
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248426,025,719 - 6,031,718 (-)NCBI
RefSeq Acc Id: XM_021246910   ⟹   XP_021102569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248426,024,460 - 6,031,718 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021102568 (Get FASTA)   NCBI Sequence Viewer  
  XP_021102569 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11311 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009295
GenBank Protein JAO00118 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021102569   ⟸   XM_021246910
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S2A6 (UniProtKB/TrEMBL),   G5BPV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102568   ⟸   XM_021246909
- Peptide Label: isoform X1
- UniProtKB: A0AAX6S385 (UniProtKB/TrEMBL),   G5BPV3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006666 ENTREZGENE
Ensembl Transcript ENSHGLT00000009395 ENTREZGENE
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  BPI_fold-superfamily_member UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
NCBI Gene Bpifa1 ENTREZGENE
PANTHER BPI FOLD-CONTAINING FAMILY A MEMBER 1 UniProtKB/TrEMBL
  PTHR47015:SF1 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt A0AAX6S2A6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S385 ENTREZGENE, UniProtKB/TrEMBL
  G5BPV3 ENTREZGENE, UniProtKB/TrEMBL