Tafa2 (TAFA chemokine like family member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tafa2 (TAFA chemokine like family member 2) Heterocephalus glaber
Analyze
Symbol: Tafa2 (Ensembl: FAM19A2)
Name: TAFA chemokine like family member 2
RGD ID: 18910109
Description: ENCODES a protein that exhibits receptor ligand activity (inferred); INVOLVED IN memory (ortholog); visual learning (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); Cognitive Dysfunction (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam19a2; family with sequence similarity 19 member A2, C-C motif chemokine like; protein FAM19A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248026,104,788 - 6,275,915 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248025,682,672 - 6,275,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tafa2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248026,104,788 - 6,275,915 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248025,682,672 - 6,275,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAFA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381261,708,273 - 62,260,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1261,708,273 - 62,279,150 (-)EnsemblGRCh38hg38GRCh38
GRCh371262,102,054 - 62,586,554 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361260,388,307 - 60,872,818 (-)NCBINCBI36Build 36hg18NCBI36
Build 341260,388,309 - 60,872,818NCBI
Celera1261,771,461 - 62,255,544 (-)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1259,153,030 - 59,637,513 (-)NCBIHuRef
CHM1_11262,069,825 - 62,554,522 (-)NCBICHM1_1
T2T-CHM13v2.01261,687,128 - 62,238,817 (-)NCBIT2T-CHM13v2.0
Tafa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910123,099,813 - 123,577,109 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10123,099,901 - 123,577,109 (+)EnsemblGRCm39 Ensembl
GRCm3810123,264,024 - 123,741,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10123,263,996 - 123,741,204 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710122,701,132 - 123,178,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610122,667,136 - 123,144,039 (+)NCBIMGSCv36mm8
Celera10125,646,982 - 126,120,933 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1072.31NCBI
Tafa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8760,827,985 - 61,303,873 (+)NCBIGRCr8
mRatBN7.2758,942,598 - 59,418,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl758,942,610 - 59,417,299 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0766,017,066 - 66,496,690 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl766,017,086 - 66,172,360 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0766,221,368 - 66,695,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4763,388,665 - 63,566,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera756,114,065 - 56,588,451 (+)NCBICelera
Cytogenetic Map7q22NCBI
Tafa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554588,935,792 - 9,351,358 (-)NCBIChiLan1.0ChiLan1.0
TAFA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21032,090,348 - 32,637,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11232,087,212 - 32,633,940 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01226,683,045 - 27,229,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11226,954,142 - 27,501,208 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1227,225,154 - 27,502,300 (+)Ensemblpanpan1.1panPan2
TAFA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1104,998,538 - 5,134,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl104,999,695 - 5,233,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha105,029,406 - 5,395,616 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0105,024,533 - 5,480,189 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl105,024,537 - 5,161,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1104,978,740 - 5,421,639 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0105,221,674 - 5,670,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0105,361,721 - 5,810,250 (-)NCBIUU_Cfam_GSD_1.0
Tafa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494553,173,603 - 53,593,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936545517,005 - 701,058 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936545517,910 - 936,630 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAFA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl526,391,996 - 26,557,852 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1526,391,969 - 26,893,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2528,995,477 - 29,036,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11157,598,179 - 58,095,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1157,597,697 - 57,763,149 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037187,714,293 - 188,247,361 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004861139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_205941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01071146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000024234   ⟹   ENSHGLP00000024016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248026,104,788 - 6,275,915 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000024235   ⟹   ENSHGLP00000024017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248026,104,788 - 6,254,368 (+)Ensembl
RefSeq Acc Id: XM_004861139   ⟹   XP_004861196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248025,739,981 - 6,275,081 (+)NCBI
RefSeq Acc Id: XM_004861140   ⟹   XP_004861197
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248025,739,980 - 6,275,081 (+)NCBI
RefSeq Acc Id: XM_004861141   ⟹   XP_004861198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248025,682,672 - 6,275,081 (+)NCBI
RefSeq Acc Id: XM_021241353   ⟹   XP_021097012
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248025,682,672 - 6,275,081 (+)NCBI
RefSeq Acc Id: XR_205941
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248025,739,979 - 6,275,081 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021097012   ⟸   XM_021241353
- UniProtKB: A0A0P6JAB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861198   ⟸   XM_004861141
- UniProtKB: A0A0P6JAB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861197   ⟸   XM_004861140
- UniProtKB: A0A0P6JAB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861196   ⟸   XM_004861139
- UniProtKB: A0A0P6JAB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024017   ⟸   ENSHGLT00000024235
RefSeq Acc Id: ENSHGLP00000024016   ⟸   ENSHGLT00000024234


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017116 Ensembl, ENTREZGENE
  ENSHGLG00000035697 UniProtKB/TrEMBL
  ENSHGLG00100052466 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024234 ENTREZGENE
  ENSHGLT00000024235 ENTREZGENE
  ENSHGLT00000070879 UniProtKB/TrEMBL
  ENSHGLT00100081741 UniProtKB/TrEMBL
InterPro Chemokine-like_TAFA UniProtKB/TrEMBL
KEGG Report hgl:101720505 UniProtKB/TrEMBL
NCBI Gene Tafa2 ENTREZGENE
PANTHER CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER UniProtKB/TrEMBL
  CHEMOKINE-LIKE PROTEIN TAFA-2 UniProtKB/TrEMBL
Pfam TAFA UniProtKB/TrEMBL
UniProt A0A0P6JAB2 ENTREZGENE, UniProtKB/TrEMBL