Smim43 (small integral membrane protein 43) - Rat Genome Database

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Gene: Smim43 (small integral membrane protein 43) Heterocephalus glaber
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Symbol: Smim43
Name: small integral membrane protein 43
RGD ID: 18910095
Description: ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN mesendoderm development (ortholog); positive regulation of glucose transmembrane transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tmem155; transmembrane protein 155
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,032,549 - 2,035,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Smim43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,032,549 - 2,035,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SMIM43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,758,930 - 121,765,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,758,881 - 121,765,427 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,680,085 - 122,686,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,899,535 - 122,905,790 (-)NCBINCBI36Build 36hg18NCBI36
Celera4120,065,643 - 120,071,897 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,407,064 - 118,413,318 (-)NCBIHuRef
CHM1_14122,656,543 - 122,662,799 (-)NCBICHM1_1
T2T-CHM13v2.04125,062,956 - 125,069,427 (-)NCBIT2T-CHM13v2.0
Smim43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,569,776 - 36,582,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,569,206 - 36,586,533 (-)EnsemblGRCm39 Ensembl
GRCm38336,515,627 - 36,521,412 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,515,057 - 36,532,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,413,979 - 36,420,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera336,399,100 - 36,404,776 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.48NCBI
Smim43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82121,304,262 - 121,314,779 (-)NCBIGRCr8
mRatBN7.22119,380,454 - 119,385,966 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2119,385,754 - 119,385,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2125,935,145 - 125,940,647 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,047,644 - 124,053,146 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,676,632 - 118,682,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,227,621 - 123,235,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera2114,336,870 - 114,344,413 (-)NCBICelera
Cytogenetic Map2q25NCBI
Smim43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542818,789,746 - 18,797,027 (+)NCBIChiLan1.0ChiLan1.0
LOC100988236
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23119,555,070 - 119,562,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14119,824,991 - 119,831,157 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04113,959,407 - 113,966,725 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14125,096,646 - 125,102,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,096,646 - 125,102,888 (-)Ensemblpanpan1.1panPan2
SMIM43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,368,083 - 18,374,817 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,368,064 - 18,368,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,584,840 - 18,591,382 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01918,455,006 - 18,492,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1918,486,394 - 18,492,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11918,437,406 - 18,443,959 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01918,719,080 - 18,725,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01919,195,023 - 19,201,775 (+)NCBIUU_Cfam_GSD_1.0
Smim43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,097,898 - 66,103,528 (+)NCBIHiC_Itri_2
SMIM43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,322,737 - 102,330,032 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,327,330 - 102,330,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMIM43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,034,264 - 69,039,166 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603747,994,004 - 48,000,343 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004854927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01055327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_004854927   ⟹   XP_004854984
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247772,032,549 - 2,035,262 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854984 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004854984   ⟸   XM_004854927


Additional Information

Database Acc Id Source(s)
NCBI Gene Tmem155 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-26 Smim43  small integral membrane protein 43  Tmem155  transmembrane protein 155  Symbol and/or name change 5135510 APPROVED