Trpm5 (transient receptor potential cation channel subfamily M member 5) - Rat Genome Database

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Gene: Trpm5 (transient receptor potential cation channel subfamily M member 5) Heterocephalus glaber
Analyze
Symbol: Trpm5
Name: transient receptor potential cation channel subfamily M member 5
RGD ID: 18910061
Description: ENCODES a protein that exhibits potassium channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN monoatomic ion transmembrane transport (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,216,123 - 15,232,200 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,215,714 - 15,236,189 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,216,123 - 15,232,200 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,215,714 - 15,236,189 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRPM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,403,991 - 2,444,514 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,404,515 - 2,444,514 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,425,745 - 2,465,744 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,382,336 - 2,400,851 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,382,335 - 2,400,851NCBI
Celera112,460,552 - 2,479,085 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef112,216,098 - 2,234,573 (-)NCBIHuRef
CHM1_1112,424,619 - 2,443,104 (-)NCBICHM1_1
T2T-CHM13v2.0112,493,342 - 2,533,837 (-)NCBIT2T-CHM13v2.0
Trpm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,625,266 - 142,648,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,622,890 - 142,648,379 (-)EnsemblGRCm39 Ensembl
GRCm387143,071,529 - 143,094,642 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,069,153 - 143,094,642 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,257,434 - 150,280,547 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,881,182 - 142,898,998 (-)NCBIMGSCv36mm8
Celera7142,827,134 - 142,850,247 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.11NCBI
Trpm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,684,811 - 207,707,380 (-)NCBIGRCr8
mRatBN7.21198,254,956 - 198,277,824 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,255,723 - 198,277,654 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1206,634,645 - 206,651,758 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,720,702 - 213,737,803 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,394,859 - 206,411,960 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,256,653 - 216,281,504 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,257,820 - 216,274,930 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,118,600 - 223,141,136 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,347,410 - 203,364,520 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11203,500,862 - 203,517,973 (-)NCBI
Celera1195,824,918 - 195,842,028 (-)NCBICelera
Cytogenetic Map1q42NCBI
Trpm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,180,475 - 14,196,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,180,067 - 14,202,041 (-)NCBIChiLan1.0ChiLan1.0
TRPM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,813,919 - 4,833,205 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,025,616 - 4,045,143 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,428,185 - 2,448,070 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,456,418 - 2,475,989 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,456,831 - 2,475,989 (-)Ensemblpanpan1.1panPan2
TRPM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,479,397 - 46,493,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,478,759 - 46,498,043 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,088,553 - 45,102,905 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,158,489 - 47,172,841 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,159,262 - 47,176,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,606,399 - 46,620,664 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,187,007 - 46,201,359 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,934,044 - 46,948,396 (-)NCBIUU_Cfam_GSD_1.0
Trpm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049472,730,855 - 2,747,349 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936794675,078 - 690,548 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936794673,755 - 688,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,647,160 - 1,664,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,646,597 - 1,664,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRPM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,219,427 - 2,239,833 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,219,852 - 2,238,454 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,420,803 - 99,438,961 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020460   ⟹   ENSHGLP00000020258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476715,216,123 - 15,232,200 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020461   ⟹   ENSHGLP00000020259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476715,216,123 - 15,232,200 (-)Ensembl
RefSeq Acc Id: XM_004852622   ⟹   XP_004852679
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476715,215,968 - 15,236,189 (-)NCBI
RefSeq Acc Id: XM_021264423   ⟹   XP_021120082
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476715,215,715 - 15,236,189 (-)NCBI
RefSeq Acc Id: XM_021264424   ⟹   XP_021120083
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476715,215,714 - 15,236,189 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004852679 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120082 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120083 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020259
Reference Protein Sequences
RefSeq Acc Id: XP_021120083   ⟸   XM_021264424
- Peptide Label: isoform X3
- UniProtKB: G5C2E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021120082   ⟸   XM_021264423
- Peptide Label: isoform X1
- UniProtKB: G5C2E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004852679   ⟸   XM_004852622
- Peptide Label: isoform X2
- UniProtKB: G5C2E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020258   ⟸   ENSHGLT00000020460
RefSeq Acc Id: ENSHGLP00000020259   ⟸   ENSHGLT00000020461


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014492 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020461 ENTREZGENE
InterPro Ion_trans_dom UniProtKB/TrEMBL
  TRPM_SLOG UniProtKB/TrEMBL
NCBI Gene Trpm5 ENTREZGENE
PANTHER TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY M MEMBER 5 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  LSDAT_euk UniProtKB/TrEMBL
UniProt G5C2E6 ENTREZGENE, UniProtKB/TrEMBL