Mrpl18 (mitochondrial ribosomal protein L18) - Rat Genome Database

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Gene: Mrpl18 (mitochondrial ribosomal protein L18) Heterocephalus glaber
Analyze
Symbol: Mrpl18
Name: mitochondrial ribosomal protein L18
RGD ID: 18909970
Description: ENCODES a protein that exhibits 5S rRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN rRNA import into mitochondrion (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); genetic disease (ortholog); FOUND IN mitochondrial large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L18, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248553,112,933 - 3,120,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248553,112,933 - 3,120,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MRPL18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386159,789,812 - 159,798,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6159,789,812 - 159,798,436 (+)EnsemblGRCh38hg38GRCh38
GRCh376160,210,844 - 160,219,461 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,131,488 - 160,139,451 (+)NCBINCBI36Build 36hg18NCBI36
Build 346160,181,908 - 160,189,871NCBI
Celera6160,857,576 - 160,865,535 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6157,681,735 - 157,689,697 (+)NCBIHuRef
CHM1_16160,473,799 - 160,481,752 (+)NCBICHM1_1
T2T-CHM13v2.06161,035,444 - 161,044,045 (+)NCBIT2T-CHM13v2.0
Mrpl18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391713,130,232 - 13,136,674 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1713,130,236 - 13,135,232 (-)EnsemblGRCm39 Ensembl
GRCm381712,911,345 - 12,917,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,911,349 - 12,916,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv371713,104,221 - 13,108,957 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361712,754,287 - 12,759,023 (-)NCBIMGSCv36mm8
Celera1712,942,903 - 12,947,639 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.72NCBI
Mrpl18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,384,951 - 50,389,769 (+)NCBIGRCr8
mRatBN7.2147,837,169 - 47,841,987 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,836,561 - 47,841,987 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,528,807 - 48,533,628 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,514,771 - 54,519,522 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,604,336 - 48,609,149 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,033,531 - 48,038,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,033,768 - 48,038,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,713,672 - 51,718,630 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,111,647 - 42,116,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,114,536 - 42,119,412 (+)NCBI
Celera143,637,628 - 43,642,435 (+)NCBICelera
Cytogenetic Map1q11NCBI
Mrpl18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543921,058,187 - 21,067,100 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543921,059,736 - 21,067,100 (-)NCBIChiLan1.0ChiLan1.0
MRPL18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25179,888,896 - 179,896,827 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16177,793,850 - 177,801,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06157,673,328 - 157,681,324 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16162,684,950 - 162,693,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6162,684,958 - 162,693,002 (+)Ensemblpanpan1.1panPan2
MRPL18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1149,038,814 - 49,043,667 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl149,038,871 - 49,043,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha149,880,740 - 49,885,636 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,223,445 - 49,228,365 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,223,559 - 49,228,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,105,805 - 49,110,739 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,976,978 - 48,981,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,592,154 - 49,597,020 (+)NCBIUU_Cfam_GSD_1.0
Mrpl18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946144,031,650 - 144,037,129 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,283,309 - 11,289,200 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,283,601 - 11,289,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,581,764 - 7,590,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,581,763 - 7,590,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.219,380,719 - 9,389,025 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,389,210 - 87,395,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1387,389,702 - 87,394,866 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604059,787,984 - 59,793,951 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004869016   ⟹   XP_004869073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248553,112,933 - 3,120,435 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004869073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010054
GenBank Protein JAO01652 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004869073   ⟸   XM_004869016
- UniProtKB: A0A0P6JBI3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007214 ENTREZGENE
Ensembl Transcript ENSHGLT00000010165 ENTREZGENE
Gene3D-CATH 3.30.420.80 UniProtKB/TrEMBL
InterPro Ribosomal_L18 UniProtKB/TrEMBL
  Ribosomal_S11_sf UniProtKB/TrEMBL
NCBI Gene Mrpl18 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12899 UniProtKB/TrEMBL
Pfam Ribosomal_L18p UniProtKB/TrEMBL
Superfamily-SCOP Translational machinery components UniProtKB/TrEMBL
UniProt A0A0P6JBI3 ENTREZGENE, UniProtKB/TrEMBL