Ppp6r2 (protein phosphatase 6 regulatory subunit 2) - Rat Genome Database

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Gene: Ppp6r2 (protein phosphatase 6 regulatory subunit 2) Heterocephalus glaber
Analyze
Symbol: Ppp6r2
Name: protein phosphatase 6 regulatory subunit 2
RGD ID: 18909854
Description: ENCODES a protein that exhibits protein phosphatase binding (inferred); protein phosphatase regulator activity (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); Charcot-Marie-Tooth disease type 4B3 (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 6 regulatory subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752332,145 - 411,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752331,301 - 434,191 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp6r2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752332,145 - 411,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752331,301 - 434,191 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP6R2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,330,774 - 50,445,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,343,304 - 50,445,090 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,781,756 - 50,883,519 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,128,626 - 49,230,380 (+)NCBINCBI36Build 36hg18NCBI36
Build 342249,071,903 - 49,173,658NCBI
Celera2234,685,889 - 34,759,532 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,700,610 - 33,773,971 (+)NCBIHuRef
CHM1_12250,740,456 - 50,842,262 (+)NCBICHM1_1
T2T-CHM13v2.02250,838,642 - 50,954,283 (+)NCBIT2T-CHM13v2.0
Ppp6r2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,095,654 - 89,171,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,095,756 - 89,171,213 (+)EnsemblGRCm39 Ensembl
GRCm381589,211,451 - 89,287,015 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,211,553 - 89,287,010 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,041,990 - 89,116,692 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,039,326 - 89,114,028 (+)NCBIMGSCv36mm8
Celera1591,340,744 - 91,415,186 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.76NCBI
Ppp6r2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,164,968 - 122,236,625 (+)NCBIGRCr8
mRatBN7.27120,285,378 - 120,356,995 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,285,406 - 120,356,395 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,036,409 - 122,107,320 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,262,571 - 124,333,478 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,226,336 - 124,297,427 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,188,609 - 130,260,209 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,227,456 - 130,259,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,874,214 - 129,944,629 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,510,323 - 127,581,836 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7116,759,219 - 116,830,063 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ppp6r2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,385,084 - 33,425,226 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,362,879 - 33,425,361 (+)NCBIChiLan1.0ChiLan1.0
PPP6R2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,236,004 - 60,361,887 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,935,751 - 63,053,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,572,446 - 30,690,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,600,643 - 49,674,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,600,643 - 49,674,482 (+)Ensemblpanpan1.1panPan2
PPP6R2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,846,250 - 16,929,855 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,846,899 - 16,929,884 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,823,360 - 16,906,921 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,571,953 - 17,655,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,571,974 - 17,665,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,296,371 - 17,379,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,619,533 - 17,703,112 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,751,658 - 17,835,270 (-)NCBIUU_Cfam_GSD_1.0
Ppp6r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945394,535 - 462,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629395,419 - 435,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629394,535 - 462,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP6R2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5285,386 - 361,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15285,381 - 361,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,441,061 - 110,497,384 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP6R2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,824,732 - 32,917,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,866,039 - 32,916,534 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,423,699 - 92,524,895 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013072440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002395192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002395193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002395194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01032472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000006678   ⟹   ENSHGLP00000006596
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624752332,145 - 411,391 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006679   ⟹   ENSHGLP00000006597
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624752332,145 - 411,391 (-)Ensembl
RefSeq Acc Id: XM_013072440   ⟹   XP_012927894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 434,191 (-)NCBI
RefSeq Acc Id: XM_021258716   ⟹   XP_021114375
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258717   ⟹   XP_021114376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258718   ⟹   XP_021114377
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 420,224 (-)NCBI
RefSeq Acc Id: XM_021258719   ⟹   XP_021114378
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 434,191 (-)NCBI
RefSeq Acc Id: XM_021258720   ⟹   XP_021114379
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258721   ⟹   XP_021114380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258722   ⟹   XP_021114381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258723   ⟹   XP_021114382
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XM_021258724   ⟹   XP_021114383
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
RefSeq Acc Id: XR_002395192
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752334,557 - 381,535 (-)NCBI
RefSeq Acc Id: XR_002395193
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752332,339 - 381,535 (-)NCBI
RefSeq Acc Id: XR_002395194
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752331,301 - 381,535 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012927894   ⟸   XM_013072440
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JTX1 (UniProtKB/TrEMBL),   G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114378   ⟸   XM_021258719
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JTX1 (UniProtKB/TrEMBL),   G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114377   ⟸   XM_021258718
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JTX1 (UniProtKB/TrEMBL),   G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114382   ⟸   XM_021258723
- Peptide Label: isoform X6
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114383   ⟸   XM_021258724
- Peptide Label: isoform X6
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114376   ⟸   XM_021258717
- Peptide Label: isoform X2
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114379   ⟸   XM_021258720
- Peptide Label: isoform X4
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114375   ⟸   XM_021258716
- Peptide Label: isoform X1
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114380   ⟸   XM_021258721
- Peptide Label: isoform X5
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114381   ⟸   XM_021258722
- Peptide Label: isoform X6
- UniProtKB: G5B2H3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006596   ⟸   ENSHGLT00000006678
RefSeq Acc Id: ENSHGLP00000006597   ⟸   ENSHGLT00000006679


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004821 Ensembl, ENTREZGENE
  ENSHGLG00100015319 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006678 ENTREZGENE
  ENSHGLT00000006679 ENTREZGENE
  ENSHGLT00100021001 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  SAPS UniProtKB/TrEMBL
NCBI Gene Ppp6r2 ENTREZGENE
PANTHER PTHR12634 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 2 UniProtKB/TrEMBL
Pfam SAPS UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0P6JTX1 ENTREZGENE, UniProtKB/TrEMBL
  G5B2H3 ENTREZGENE, UniProtKB/TrEMBL