Abce1 (ATP binding cassette subfamily E member 1) - Rat Genome Database

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Gene: Abce1 (ATP binding cassette subfamily E member 1) Heterocephalus glaber
Analyze
Symbol: Abce1
Name: ATP binding cassette subfamily E member 1
RGD ID: 18909771
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); CTPase activity (inferred); INVOLVED IN rescue of stalled ribosome (inferred); ribosomal subunit export from nucleus (inferred); ribosome disassembly (inferred); PARTICIPATES IN translation termination pathway; ASSOCIATED WITH breast carcinoma (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family E member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248534,065,206 - 4,085,777 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248534,059,271 - 4,087,313 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
cytosolic ribosome  (IEA,ISO)
mitochondrion  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abce1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248534,065,206 - 4,085,777 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248534,059,271 - 4,087,313 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ABCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384145,098,311 - 145,129,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4145,098,288 - 145,129,524 (+)EnsemblGRCh38hg38GRCh38
GRCh374146,019,463 - 146,050,676 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364146,238,606 - 146,270,126 (+)NCBINCBI36Build 36hg18NCBI36
Build 344146,377,090 - 146,407,936NCBI
Celera4143,346,498 - 143,378,018 (+)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4141,750,477 - 141,781,999 (+)NCBIHuRef
CHM1_14145,995,426 - 146,026,945 (+)NCBICHM1_1
T2T-CHM13v2.04148,415,703 - 148,446,916 (+)NCBIT2T-CHM13v2.0
Abce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39880,410,071 - 80,438,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl880,410,091 - 80,438,369 (-)EnsemblGRCm39 Ensembl
GRCm38879,683,442 - 79,711,740 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl879,683,462 - 79,711,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv37882,207,341 - 82,235,639 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36882,579,717 - 82,607,693 (-)NCBIMGSCv36mm8
Celera883,959,260 - 83,987,564 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.77NCBI
Abce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81945,109,880 - 45,134,819 (+)NCBIGRCr8
mRatBN7.21928,205,566 - 28,230,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1928,205,555 - 28,230,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1935,065,938 - 35,090,817 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01935,720,012 - 35,744,891 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01937,954,884 - 37,979,761 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01931,867,960 - 31,892,863 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1931,867,981 - 31,892,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01942,771,943 - 42,796,838 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41930,093,741 - 30,118,625 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11930,098,545 - 30,123,448 (+)NCBI
Celera1927,713,656 - 27,738,540 (+)NCBICelera
Cytogenetic Map19q11NCBI
Abce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,029,399 - 1,058,902 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554281,029,909 - 1,058,902 (+)NCBIChiLan1.0ChiLan1.0
ABCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23142,978,649 - 143,009,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14143,343,566 - 143,374,659 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04137,445,210 - 137,476,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14149,105,912 - 149,137,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4149,105,912 - 149,137,028 (+)Ensemblpanpan1.1panPan2
ABCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11543,781,838 - 43,813,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1543,781,885 - 43,811,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1544,173,958 - 44,205,596 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01544,450,427 - 44,482,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1544,450,466 - 44,486,656 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11543,723,783 - 43,755,384 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01543,809,854 - 43,842,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01544,074,527 - 44,106,452 (+)NCBIUU_Cfam_GSD_1.0
Abce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530146,518,167 - 46,547,561 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365353,955,682 - 3,985,223 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365353,956,490 - 3,985,002 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl883,299,322 - 83,353,109 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1883,302,055 - 83,353,208 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2888,572,102 - 88,623,679 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1791,673,359 - 91,704,774 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603771,313,759 - 71,345,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002587   ⟹   ENSHGLP00000002535
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248534,065,206 - 4,085,777 (+)Ensembl
RefSeq Acc Id: XM_021247685   ⟹   XP_021103344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248534,059,272 - 4,087,313 (+)NCBI
RefSeq Acc Id: XM_021247686   ⟹   XP_021103345
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248534,059,271 - 4,087,313 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021103344 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103345 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17456 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002535
  ENSHGLP00100013667
GenBank Protein JAO01605 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103345   ⟸   XM_021247686
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021103344   ⟸   XM_021247685
- Peptide Label: isoform X1
- UniProtKB: G5C7E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002535   ⟸   ENSHGLT00000002587


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001909 Ensembl, ENTREZGENE
  ENSHGLG00100010107 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002587 ENTREZGENE
  ENSHGLT00100013822 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro 4Fe4S_Fe-S-bd UniProtKB/TrEMBL
  4Fe4S_Fe_S_CS UniProtKB/TrEMBL
  AAA+_ATPase UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RLI1 UniProtKB/TrEMBL
  RLI_dom_1 UniProtKB/TrEMBL
  RNaseL-inhib-like_metal-bd_dom UniProtKB/TrEMBL
NCBI Gene Abce1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY E MEMBER 1 UniProtKB/TrEMBL
  PTHR19248 UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/TrEMBL
  Fer4 UniProtKB/TrEMBL
  RLI UniProtKB/TrEMBL
PRINTS ABCEFAMILY UniProtKB/TrEMBL
PROSITE 4FE4S_FER_1 UniProtKB/TrEMBL
  4FE4S_FER_2 UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP 4Fe-4S ferredoxins UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt G5C7E5 ENTREZGENE, UniProtKB/TrEMBL