Tekt1 (tektin 1) - Rat Genome Database

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Gene: Tekt1 (tektin 1) Heterocephalus glaber
Analyze
Symbol: Tekt1
Name: tektin 1
RGD ID: 18909472
Description: INVOLVED IN cilium assembly (inferred); cilium movement involved in cell motility (inferred); flagellated sperm motility (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tektin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,218,590 - 7,249,538 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,218,533 - 7,248,593 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tekt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,218,590 - 7,249,538 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,218,533 - 7,248,593 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TEKT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,797,993 - 6,831,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,789,133 - 6,831,761 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,701,312 - 6,735,048 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,644,024 - 6,675,784 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,644,024 - 6,675,784NCBI
Celera176,729,093 - 6,760,865 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,598,870 - 6,630,626 (-)NCBIHuRef
CHM1_1176,713,517 - 6,745,273 (-)NCBICHM1_1
T2T-CHM13v2.0176,698,681 - 6,732,423 (-)NCBIT2T-CHM13v2.0
Tekt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,235,543 - 72,253,268 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,235,548 - 72,253,268 (-)EnsemblGRCm39 Ensembl
GRCm381172,344,717 - 72,362,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,344,722 - 72,362,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,158,222 - 72,175,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,160,917 - 72,178,068 (-)NCBIMGSCv36mm8
Celera1179,864,978 - 79,882,394 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1144.03NCBI
Tekt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,450,712 - 57,479,121 (-)NCBIGRCr8
mRatBN7.21056,952,164 - 56,980,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,952,167 - 56,980,572 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,615,143 - 61,643,556 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,103,620 - 61,132,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,602,709 - 56,631,121 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01058,895,689 - 58,924,098 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,895,674 - 58,924,137 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,636,233 - 58,663,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,219,929 - 59,248,976 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,233,552 - 59,262,599 (-)NCBI
Celera1056,081,049 - 56,108,364 (-)NCBICelera
Cytogenetic Map10q24NCBI
Tekt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,276,702 - 12,301,630 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,278,515 - 12,301,736 (-)NCBIChiLan1.0ChiLan1.0
TEKT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,387,356 - 14,427,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,353,555 - 16,393,737 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,830,517 - 6,862,596 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,819,230 - 6,851,014 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,819,230 - 6,851,014 (-)Ensemblpanpan1.1panPan2
TEKT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,600,983 - 30,614,679 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,565,639 - 30,614,673 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0530,702,285 - 30,716,037 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,702,697 - 30,716,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,668,771 - 30,682,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,627,225 - 30,640,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,800,692 - 30,814,062 (+)NCBIUU_Cfam_GSD_1.0
Tekt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,683,936 - 54,697,449 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,195,280 - 1,216,960 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,195,283 - 1,216,993 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEKT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,526,193 - 50,580,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,526,188 - 50,552,083 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,524,664 - 52,548,893 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEKT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,161,826 - 6,184,735 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,159,008 - 6,184,711 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605915,254,603 - 15,277,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023277   ⟹   ENSHGLP00000023062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247867,218,590 - 7,249,538 (+)Ensembl
RefSeq Acc Id: XM_004857250   ⟹   XP_004857307
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,218,534 - 7,248,593 (+)NCBI
RefSeq Acc Id: XM_004857252   ⟹   XP_004857309
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,218,534 - 7,248,580 (+)NCBI
RefSeq Acc Id: XM_004857253   ⟹   XP_004857310
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,218,534 - 7,248,579 (+)NCBI
RefSeq Acc Id: XM_021238336   ⟹   XP_021093995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,218,533 - 7,248,593 (+)NCBI
RefSeq Acc Id: XM_021238337   ⟹   XP_021093996
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,218,534 - 7,248,581 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857307 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857309 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857310 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093995 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093996 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023062
GenBank Protein JAO03239 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021093995   ⟸   XM_021238336
- Peptide Label: isoform X2
- UniProtKB: G5B916 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857307   ⟸   XM_004857250
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K8R4 (UniProtKB/TrEMBL),   G5B916 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093996   ⟸   XM_021238337
- Peptide Label: isoform X3
- UniProtKB: G5B916 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857309   ⟸   XM_004857252
- Peptide Label: isoform X4
- UniProtKB: G5B916 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857310   ⟸   XM_004857253
- Peptide Label: isoform X5
- UniProtKB: G5B916 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023062   ⟸   ENSHGLT00000023277


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016444 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023277 ENTREZGENE
InterPro Tektin UniProtKB/TrEMBL
  Tektin-like UniProtKB/TrEMBL
KEGG Report hgl:101702016 UniProtKB/TrEMBL
NCBI Gene Tekt1 ENTREZGENE
PANTHER PTHR19960 UniProtKB/TrEMBL
  TEKTIN-1 UniProtKB/TrEMBL
Pfam Tektin UniProtKB/TrEMBL
PRINTS TEKTIN UniProtKB/TrEMBL
UniProt A0A0P6K8R4 ENTREZGENE, UniProtKB/TrEMBL
  G5B916 ENTREZGENE, UniProtKB/TrEMBL