Agpat5 (1-acylglycerol-3-phosphate O-acyltransferase 5) - Rat Genome Database

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Gene: Agpat5 (1-acylglycerol-3-phosphate O-acyltransferase 5) Heterocephalus glaber
Analyze
Symbol: Agpat5
Name: 1-acylglycerol-3-phosphate O-acyltransferase 5
RGD ID: 18909433
Description: ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); INVOLVED IN acylglycerol metabolic process (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Keloid (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrion (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248614,596,251 - 4,648,183 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248614,596,326 - 4,645,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
genetic disease  (ISO)
Keloid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Agpat5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248614,596,251 - 4,648,183 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248614,596,326 - 4,645,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AGPAT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3886,708,642 - 6,761,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl86,708,642 - 6,761,503 (+)EnsemblGRCh38hg38GRCh38
GRCh3786,566,163 - 6,619,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3686,553,286 - 6,606,432 (+)NCBINCBI36Build 36hg18NCBI36
Build 3486,553,621 - 6,604,592NCBI
Celera86,543,403 - 6,596,547 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef86,346,776 - 6,399,929 (+)NCBIHuRef
CHM1_186,655,163 - 6,708,308 (+)NCBICHM1_1
T2T-CHM13v2.086,464,039 - 6,516,588 (+)NCBIT2T-CHM13v2.0
Agpat5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39818,896,295 - 18,934,429 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl818,896,293 - 18,941,377 (+)EnsemblGRCm39 Ensembl
GRCm38818,846,279 - 18,884,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl818,846,277 - 18,891,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37818,846,279 - 18,884,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36818,846,481 - 18,884,358 (+)NCBIMGSCv36mm8
Celera818,979,696 - 19,017,832 (+)NCBICelera
Cytogenetic Map8A1.3NCBI
cM Map810.3NCBI
Agpat5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81677,641,887 - 77,688,148 (-)NCBIGRCr8
mRatBN7.21670,939,480 - 70,985,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1670,943,135 - 70,985,560 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1676,216,342 - 76,262,602 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01679,662,971 - 79,709,372 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01674,912,389 - 74,958,791 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01675,812,837 - 75,855,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1675,812,997 - 75,855,745 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01675,417,447 - 75,460,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41675,745,813 - 75,788,182 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11675,747,341 - 75,789,023 (-)NCBI
Celera1668,789,188 - 68,831,515 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Agpat5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540354,007,228 - 54,036,277 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540354,005,001 - 54,052,363 (-)NCBIChiLan1.0ChiLan1.0
AGPAT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2721,513,171 - 21,564,094 (+)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v08519,824 - 572,617 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.186,713,082 - 6,765,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl86,713,082 - 6,765,472 (+)Ensemblpanpan1.1panPan2
AGPAT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11658,755,720 - 58,797,916 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1658,755,735 - 58,795,704 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1654,264,604 - 54,322,426 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01657,251,483 - 57,309,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1657,252,797 - 57,309,550 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11658,900,534 - 58,958,279 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01655,259,838 - 55,317,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01655,634,994 - 55,692,847 (-)NCBIUU_Cfam_GSD_1.0
Agpat5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049434,652,141 - 4,691,496 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366154,652,299 - 4,691,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366154,652,141 - 4,691,496 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGPAT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1537,801,183 - 37,853,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11537,801,121 - 37,853,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21543,013,522 - 43,065,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGPAT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.186,488,736 - 6,541,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl86,488,687 - 6,542,995 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605448,603,190 - 48,655,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003644   ⟹   ENSHGLP00000003589
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248614,596,251 - 4,648,183 (+)Ensembl
RefSeq Acc Id: XM_004869590   ⟹   XP_004869647
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248614,596,326 - 4,645,708 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869647 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003589
Reference Protein Sequences
RefSeq Acc Id: XP_004869647   ⟸   XM_004869590
RefSeq Acc Id: ENSHGLP00000003589   ⟸   ENSHGLT00000003644


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002651 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003644 ENTREZGENE
NCBI Gene Agpat5 ENTREZGENE