Adra1d (adrenoceptor alpha 1D) - Rat Genome Database

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Pathways
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Gene: Adra1d (adrenoceptor alpha 1D) Heterocephalus glaber
Analyze
Symbol: Adra1d
Name: adrenoceptor alpha 1D
RGD ID: 18909350
Description: ENCODES a protein that exhibits alpha1-adrenergic receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure (ortholog); neuron-glial cell signaling (ortholog); norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH diastolic heart failure (ortholog); genetic disease (ortholog); Huntington's disease-like 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-1D adrenergic receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247415,274,187 - 5,296,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247415,276,484 - 5,297,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Adra1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247415,274,187 - 5,296,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247415,276,484 - 5,297,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ADRA1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38204,220,630 - 4,249,287 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl204,220,630 - 4,249,287 (-)EnsemblGRCh38hg38GRCh38
GRCh37204,201,277 - 4,229,934 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36204,149,278 - 4,177,659 (-)NCBINCBI36Build 36hg18NCBI36
Build 34204,149,815 - 4,177,659NCBI
Celera204,266,123 - 4,294,513 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef204,150,034 - 4,178,575 (-)NCBIHuRef
CHM1_1204,201,589 - 4,229,908 (-)NCBICHM1_1
T2T-CHM13v2.0204,254,950 - 4,283,627 (-)NCBIT2T-CHM13v2.0
Adra1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,387,277 - 131,404,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,387,770 - 131,404,203 (-)EnsemblGRCm39 Ensembl
GRCm382131,545,357 - 131,562,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,545,850 - 131,562,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv372131,371,093 - 131,388,021 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,237,291 - 131,253,726 (-)NCBIMGSCv36mm8
Celera2132,774,260 - 132,791,226 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.5NCBI
Adra1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83139,246,333 - 139,262,331 (-)NCBIGRCr8
mRatBN7.23118,793,356 - 118,809,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3118,793,346 - 118,809,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3122,686,724 - 122,702,749 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,282,512 - 131,298,645 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,942,820 - 128,958,851 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03124,129,558 - 124,145,566 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,129,558 - 124,145,566 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03130,621,199 - 130,637,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43119,279,974 - 119,295,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,185,546 - 119,201,558 (-)NCBI
Celera3117,597,347 - 117,613,356 (-)NCBICelera
Cytogenetic Map3q36NCBI
Adra1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,000,257 - 15,022,712 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,000,257 - 15,022,712 (-)NCBIChiLan1.0ChiLan1.0
ADRA1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,163,221 - 5,199,354 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1205,160,045 - 5,196,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0204,242,788 - 4,271,295 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,040,044 - 4,069,627 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,040,888 - 4,068,018 (-)Ensemblpanpan1.1panPan2
ADRA1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,231,771 - 17,239,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,213,643 - 17,214,761 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,213,643 - 17,214,761 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,037,075 - 17,059,959 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02417,632,268 - 17,650,297 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2417,631,302 - 17,650,297 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12417,226,509 - 17,249,378 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02417,332,470 - 17,355,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02417,665,923 - 17,688,810 (+)NCBIUU_Cfam_GSD_1.0
Adra1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,083,023 - 166,111,898 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648514,515,494 - 14,537,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648514,514,395 - 14,538,389 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADRA1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,517,021 - 31,538,362 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,517,021 - 31,537,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21735,851,791 - 35,871,365 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADRA1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,859,651 - 34,888,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl234,860,483 - 34,887,779 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660719,432,699 - 9,461,985 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004840767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01018896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000015059   ⟹   ENSHGLP00000014909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247415,274,187 - 5,296,986 (-)Ensembl
RefSeq Acc Id: XM_004840767   ⟹   XP_004840824
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247415,276,484 - 5,297,594 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004840824 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014909
Reference Protein Sequences
RefSeq Acc Id: XP_004840824   ⟸   XM_004840767
RefSeq Acc Id: ENSHGLP00000014909   ⟸   ENSHGLT00000015059


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010656 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015059 ENTREZGENE
NCBI Gene Adra1d ENTREZGENE