Rnf130 (ring finger protein 130) - Rat Genome Database

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Gene: Rnf130 (ring finger protein 130) Heterocephalus glaber
Analyze
Symbol: Rnf130
Name: ring finger protein 130
RGD ID: 18909206
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN programmed cell death (ortholog); ASSOCIATED WITH genetic disease (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF130
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,788,980 - 42,885,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,760,048 - 42,885,671 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Rnf130
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,788,980 - 42,885,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,760,048 - 42,885,671 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RNF130
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,911,651 - 180,071,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,911,651 - 180,072,113 (-)EnsemblGRCh38hg38GRCh38
GRCh375179,382,067 - 179,498,759 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365179,315,080 - 179,431,715 (-)NCBINCBI36Build 36hg18NCBI36
Build 345179,315,079 - 179,431,715NCBI
Celera5175,007,667 - 175,124,334 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,106,824 - 174,223,323 (-)NCBIHuRef
CHM1_15178,814,509 - 178,931,564 (-)NCBICHM1_1
T2T-CHM13v2.05180,466,633 - 180,626,844 (-)NCBIT2T-CHM13v2.0
Rnf130
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,916,158 - 50,016,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,916,173 - 50,016,546 (+)EnsemblGRCm39 Ensembl
GRCm381150,025,331 - 50,125,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,025,346 - 50,125,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,838,833 - 49,918,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,868,754 - 49,948,158 (+)NCBIMGSCv36mm8
MGSCv361150,438,610 - 50,518,097 (+)NCBIMGSCv36mm8
Celera1154,587,997 - 54,667,386 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.16NCBI
Rnf130
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,843,920 - 34,957,130 (+)NCBIGRCr8
mRatBN7.21034,342,835 - 34,456,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,342,830 - 34,456,062 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,018,868 - 39,109,075 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,557,284 - 7,648,324 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,012,539 - 34,102,754 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,537,976 - 35,610,711 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01035,306,181 - 35,372,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1033,725,463 - 33,782,965 (+)NCBICelera
Cytogenetic Map10q22NCBI
Rnf130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408599,478 - 661,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955408561,719 - 660,775 (+)NCBIChiLan1.0ChiLan1.0
RNF130
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,860,525 - 175,020,727 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15173,000,065 - 173,160,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,079,080 - 175,233,759 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15182,438,307 - 182,552,609 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,402,291 - 182,552,613 (-)Ensemblpanpan1.1panPan2
RNF130
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,662,685 - 1,788,896 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,645,512 - 1,746,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,767,065 - 1,905,100 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,617,343 - 1,755,463 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,616,786 - 1,753,794 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,589,103 - 1,727,146 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,668,351 - 1,806,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0111,908,452 - 2,046,546 (+)NCBIUU_Cfam_GSD_1.0
Rnf130
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,572,164 - 119,633,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936739748,414 - 843,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936739781,938 - 843,044 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,515,733 - 78,670,028 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,515,718 - 78,670,035 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,138,753 - 80,232,858 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF130
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,647,146 - 81,794,893 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2381,682,202 - 81,794,489 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607513,027,973 - 13,175,976 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027014   ⟹   ENSHGLP00000026776
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,788,980 - 42,885,648 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000027015   ⟹   ENSHGLP00000026777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,788,980 - 42,885,648 (-)Ensembl
RefSeq Acc Id: XM_004836739   ⟹   XP_004836796
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,788,926 - 42,885,671 (-)NCBI
RefSeq Acc Id: XM_013065256   ⟹   XP_012920710
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,760,048 - 42,885,671 (-)NCBI
RefSeq Acc Id: XM_013065257   ⟹   XP_012920711
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,788,926 - 42,885,671 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836796 (Get FASTA)   NCBI Sequence Viewer  
  XP_012920710 (Get FASTA)   NCBI Sequence Viewer  
  XP_012920711 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026776
  ENSHGLP00000026777
Reference Protein Sequences
RefSeq Acc Id: XP_012920710   ⟸   XM_013065256
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012920711   ⟸   XM_013065257
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004836796   ⟸   XM_004836739
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000026777   ⟸   ENSHGLT00000027015
RefSeq Acc Id: ENSHGLP00000026776   ⟸   ENSHGLT00000027014


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019044 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027014 ENTREZGENE
  ENSHGLT00000027015 ENTREZGENE
NCBI Gene Rnf130 ENTREZGENE