Fgb (fibrinogen beta chain) - Rat Genome Database

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Gene: Fgb (fibrinogen beta chain) Heterocephalus glaber
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Symbol: Fgb
Name: fibrinogen beta chain
RGD ID: 18909158
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); protein-folding chaperone binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN blood coagulation, fibrin clot formation (ortholog); cell-matrix adhesion (ortholog); cellular response to interleukin-1 (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH cardiovascular system disease (ortholog); carotid artery disease (ortholog); congenital afibrinogenemia (ortholog); FOUND IN blood microparticle (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248585,864,784 - 5,874,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248585,866,104 - 5,874,173 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fgb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248585,864,784 - 5,874,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248585,866,104 - 5,874,173 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FGB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384154,562,980 - 154,572,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4154,563,011 - 154,572,807 (+)EnsemblGRCh38hg38GRCh38
GRCh374155,484,132 - 155,493,959 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364155,703,596 - 155,711,688 (+)NCBINCBI36Build 36hg18NCBI36
Build 344155,841,767 - 155,849,841NCBI
Celera4152,815,112 - 152,824,894 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4151,224,828 - 151,234,610 (+)NCBIHuRef
CHM1_14155,462,053 - 155,471,836 (+)NCBICHM1_1
T2T-CHM13v2.04157,894,764 - 157,904,590 (+)NCBIT2T-CHM13v2.0
Fgb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,949,553 - 82,957,170 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,947,448 - 82,957,170 (-)EnsemblGRCm39 Ensembl
GRCm38383,042,246 - 83,049,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl383,040,141 - 83,049,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37382,846,225 - 82,853,712 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36383,128,230 - 83,135,717 (-)NCBIMGSCv36mm8
Celera383,046,408 - 83,053,935 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.98NCBI
Fgb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,693,966 - 170,700,875 (-)NCBIGRCr8
mRatBN7.22168,394,901 - 168,402,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2168,394,916 - 168,405,979 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2175,586,120 - 175,593,059 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,607,044 - 173,613,983 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02168,208,465 - 168,215,404 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02182,028,044 - 182,035,026 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2182,027,115 - 182,038,178 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02201,442,664 - 201,449,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42174,768,193 - 174,775,102 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12174,718,265 - 174,725,209 (-)NCBI
Celera2162,422,542 - 162,429,467 (-)NCBICelera
Cytogenetic Map2q34NCBI
Fgb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554718,822,965 - 8,832,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554718,824,901 - 8,832,836 (-)NCBIChiLan1.0ChiLan1.0
FGB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23152,475,483 - 152,483,116 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14152,830,934 - 152,838,659 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04146,929,561 - 146,937,665 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14158,747,659 - 158,755,766 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4158,747,659 - 158,755,766 (+)Ensemblpanpan1.1panPan2
FGB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,220,690 - 52,228,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,220,611 - 52,228,250 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1552,565,222 - 52,573,066 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01552,907,656 - 52,915,500 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1552,907,681 - 52,915,468 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,162,583 - 52,170,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,267,207 - 52,275,052 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01552,581,569 - 52,589,416 (+)NCBIUU_Cfam_GSD_1.0
Fgb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530138,233,115 - 38,240,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,306,109 - 1,313,386 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,306,076 - 1,313,485 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,595,688 - 74,607,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,598,170 - 74,607,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,952,697 - 78,961,938 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,106,468 - 101,114,566 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,106,483 - 101,114,662 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603780,761,750 - 80,769,888 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002792   ⟹   ENSHGLP00000002738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248585,864,784 - 5,874,869 (-)Ensembl
RefSeq Acc Id: XM_004869219   ⟹   XP_004869276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248585,866,104 - 5,874,173 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004869276 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10524 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002738
RefSeq Acc Id: XP_004869276   ⟸   XM_004869219
- UniProtKB: G5BML3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002738   ⟸   ENSHGLT00000002792


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002060 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002792 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.50 UniProtKB/TrEMBL
  3.90.215.10 UniProtKB/TrEMBL
InterPro Fibrinogen UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_a/b/g_coil_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
KEGG Report hgl:101698228 UniProtKB/TrEMBL
NCBI Gene Fgb ENTREZGENE
PANTHER FIBRINOGEN ALPHA CHAIN UniProtKB/TrEMBL
  FIBRINOGEN C-TERMINAL DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Fib_alpha UniProtKB/TrEMBL
  Fibrinogen_C UniProtKB/TrEMBL
PROSITE FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
SMART FBG UniProtKB/TrEMBL
  Fib_alpha UniProtKB/TrEMBL
Superfamily-SCOP Fibrinogen coiled-coil and central regions UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt G5BML3 ENTREZGENE, UniProtKB/TrEMBL