Ralgapb (Ral GTPase activating protein non-catalytic subunit beta) - Rat Genome Database

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Gene: Ralgapb (Ral GTPase activating protein non-catalytic subunit beta) Heterocephalus glaber
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Symbol: Ralgapb
Name: Ral GTPase activating protein non-catalytic subunit beta (Ensembl:Ral GTPase activating protein non-catalytic beta subunit)
RGD ID: 18908917
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); focal epilepsy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ral GTPase activating protein non-catalytic beta subunit; ral GTPase-activating protein subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248421,067,648 - 1,167,833 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ralgapb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248421,067,648 - 1,167,833 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RALGAPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,472,843 - 38,578,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,472,816 - 38,578,859 (+)EnsemblGRCh38hg38GRCh38
GRCh372037,101,486 - 37,207,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,534,900 - 36,640,918 (+)NCBINCBI36Build 36hg18NCBI36
Celera2033,812,295 - 33,918,296 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,838,335 - 33,944,354 (+)NCBIHuRef
CHM1_12037,005,720 - 37,111,714 (+)NCBICHM1_1
T2T-CHM13v2.02040,202,515 - 40,308,510 (+)NCBIT2T-CHM13v2.0
Ralgapb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392158,251,722 - 158,341,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2158,251,768 - 158,341,173 (+)EnsemblGRCm39 Ensembl
GRCm382158,409,830 - 158,499,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,409,848 - 158,499,253 (+)EnsemblGRCm38mm10GRCm38
MGSCv372158,235,589 - 158,324,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362158,101,294 - 158,190,694 (+)NCBIMGSCv36mm8
Celera2164,346,414 - 164,436,672 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.72NCBI
Ralgapb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,482,344 - 167,571,975 (+)NCBIGRCr8
mRatBN7.23147,062,443 - 147,152,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,062,364 - 147,152,090 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,911,879 - 150,984,063 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,411,177 - 159,483,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03157,146,426 - 157,218,737 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03154,910,291 - 154,983,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,905,141 - 154,983,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03160,623,751 - 160,696,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43149,137,224 - 149,212,377 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13149,031,561 - 149,118,099 (+)NCBI
Celera3145,780,077 - 145,852,667 (+)NCBICelera
Cytogenetic Map3q42NCBI
Ralgapb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544518,140,944 - 18,241,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544518,146,316 - 18,241,128 (-)NCBIChiLan1.0ChiLan1.0
RALGAPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22144,197,244 - 44,304,118 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12044,190,342 - 44,297,208 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02034,797,472 - 34,903,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12035,906,029 - 36,011,685 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2035,906,029 - 36,011,685 (+)Ensemblpanpan1.1panPan2
RALGAPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12426,948,626 - 27,032,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2426,961,628 - 27,070,850 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2426,594,210 - 26,677,570 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,645,025 - 27,728,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,644,901 - 27,728,254 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,919,244 - 27,002,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02427,027,094 - 27,110,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,515,215 - 27,598,354 (+)NCBIUU_Cfam_GSD_1.0
Ralgapb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,840,609 - 175,945,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365612,804,052 - 2,908,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365612,806,195 - 2,908,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RALGAPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1741,507,806 - 41,606,898 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11741,507,756 - 41,606,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21746,951,706 - 47,014,116 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RALGAPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,177,380 - 25,285,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,176,956 - 25,307,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605074,014,842 - 74,123,559 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000017671   ⟹   ENSHGLP00000017496
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248421,067,648 - 1,167,833 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000017672   ⟹   ENSHGLP00000017497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248421,067,648 - 1,160,201 (-)Ensembl
RefSeq Acc Id: XM_004867777   ⟹   XP_004867834
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,778 (-)NCBI
RefSeq Acc Id: XM_004867778   ⟹   XP_004867835
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBI
RefSeq Acc Id: XM_004867779   ⟹   XP_004867836
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,778 (-)NCBI
RefSeq Acc Id: XM_004867780   ⟹   XP_004867837
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,776 (-)NCBI
RefSeq Acc Id: XM_004867781   ⟹   XP_004867838
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,776 (-)NCBI
RefSeq Acc Id: XM_013066716   ⟹   XP_012922170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBI
RefSeq Acc Id: XM_013066717   ⟹   XP_012922171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,776 (-)NCBI
RefSeq Acc Id: XR_002390238
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBI
RefSeq Acc Id: XP_004867835   ⟸   XM_004867778
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012922170   ⟸   XM_013066716
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004867836   ⟸   XM_004867779
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004867834   ⟸   XM_004867777
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004867838   ⟸   XM_004867781
- Peptide Label: isoform X7
RefSeq Acc Id: XP_004867837   ⟸   XM_004867780
- Peptide Label: isoform X6
- UniProtKB: G5B810 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922171   ⟸   XM_013066717
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000017496   ⟸   ENSHGLT00000017671
RefSeq Acc Id: ENSHGLP00000017497   ⟸   ENSHGLT00000017672


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012527 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017671 ENTREZGENE
  ENSHGLT00000017672 ENTREZGENE
Gene3D-CATH 3.40.50.11210 UniProtKB/TrEMBL
InterPro RALGAPB UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/TrEMBL
  Rap/Ran_GAP_dom UniProtKB/TrEMBL
  RGPA/RALGAPB_N UniProtKB/TrEMBL
NCBI Gene Ralgapb ENTREZGENE
PANTHER PTHR21344 UniProtKB/TrEMBL
  RAL GTPASE-ACTIVATING PROTEIN SUBUNIT BETA UniProtKB/TrEMBL
Pfam RALGAPB_N UniProtKB/TrEMBL
PROSITE RAPGAP UniProtKB/TrEMBL
Superfamily-SCOP SSF111347 UniProtKB/TrEMBL
UniProt G5B810 ENTREZGENE, UniProtKB/TrEMBL