Znf217 (zinc finger protein 217) - Rat Genome Database

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Gene: Znf217 (zinc finger protein 217) Heterocephalus glaber
Analyze
Symbol: Znf217
Name: zinc finger protein 217
RGD ID: 18908860
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); castration-resistant prostate carcinoma (ortholog); genetic disease (ortholog); FOUND IN histone deacetylase complex (ortholog); mitochondrion (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,655,806 - 2,668,499 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,634,571 - 2,668,191 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf217
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,655,806 - 2,668,499 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,634,571 - 2,668,191 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF217
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382053,567,071 - 53,597,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2053,567,071 - 53,609,907 (-)EnsemblGRCh38hg38GRCh38
GRCh372052,183,610 - 52,210,378 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,617,017 - 51,633,043 (-)NCBINCBI36Build 36hg18NCBI36
Build 342051,617,018 - 51,633,043NCBI
Celera2048,888,265 - 48,904,290 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2048,929,869 - 48,945,895 (-)NCBIHuRef
CHM1_12052,086,790 - 52,102,817 (-)NCBICHM1_1
T2T-CHM13v2.02055,339,255 - 55,382,109 (-)NCBIT2T-CHM13v2.0
Zfp217
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392169,950,563 - 169,993,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2169,950,563 - 169,990,023 (-)EnsemblGRCm39 Ensembl
GRCm382170,108,643 - 170,151,677 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2170,108,643 - 170,148,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv372169,934,143 - 169,968,175 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362169,801,284 - 169,822,425 (-)NCBIMGSCv36mm8
Celera2176,059,701 - 176,093,747 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map289.91NCBI
Zfp217
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83179,309,178 - 179,349,853 (-)NCBIGRCr8
mRatBN7.23158,890,464 - 158,931,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3158,892,265 - 158,913,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,692,169 - 162,702,892 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03171,191,598 - 171,202,319 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03168,932,990 - 168,943,713 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03166,981,419 - 167,022,349 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3166,983,220 - 166,994,286 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03173,095,053 - 173,107,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43161,150,458 - 161,161,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13161,058,673 - 161,071,074 (-)NCBI
Celera3157,442,743 - 157,453,463 (-)NCBICelera
Cytogenetic Map3q42NCBI
Znf217
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554455,326,905 - 5,337,573 (+)NCBIChiLan1.0ChiLan1.0
ZNF217
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,325,134 - 59,366,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12059,318,252 - 59,360,052 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02049,919,084 - 49,949,693 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12051,027,471 - 51,066,274 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2051,024,632 - 51,066,128 (-)Ensemblpanpan1.1panPan2
ZNF217
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12439,411,531 - 39,423,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2439,412,277 - 39,438,204 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2438,656,769 - 38,681,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02440,121,939 - 40,146,229 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2440,126,366 - 40,135,162 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12439,358,476 - 39,382,728 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02439,494,062 - 39,518,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02440,075,613 - 40,089,177 (-)NCBIUU_Cfam_GSD_1.0
Znf217
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640186,401,329 - 186,440,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365141,867,840 - 1,894,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365141,881,034 - 1,894,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF217
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1754,605,943 - 54,648,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11754,605,939 - 54,648,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21761,284,292 - 61,327,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF217
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1210,427,584 - 10,455,308 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl210,439,082 - 10,450,670 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,645,726 - 58,673,818 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021414   ⟹   ENSHGLP00000021210
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247902,655,806 - 2,668,499 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000021415   ⟹   ENSHGLP00000021211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247902,655,806 - 2,668,499 (+)Ensembl
RefSeq Acc Id: XM_004858032   ⟹   XP_004858089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,646,444 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_004858033   ⟹   XP_004858090
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,646,113 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_004858034   ⟹   XP_004858091
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,642,673 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239022   ⟹   XP_021094681
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,634,574 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239023   ⟹   XP_021094682
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,634,904 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239024   ⟹   XP_021094683
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,635,158 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239025   ⟹   XP_021094684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,656,019 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239026   ⟹   XP_021094685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,654,077 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239027   ⟹   XP_021094686
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,647,905 - 2,668,191 (+)NCBI
RefSeq Acc Id: XM_021239028   ⟹   XP_021094687
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247902,634,571 - 2,668,191 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021094687   ⟸   XM_021239028
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094681   ⟸   XM_021239022
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094682   ⟸   XM_021239023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094683   ⟸   XM_021239024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004858091   ⟸   XM_004858034
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004858090   ⟸   XM_004858033
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004858089   ⟸   XM_004858032
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094686   ⟸   XM_021239027
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094685   ⟸   XM_021239026
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094684   ⟸   XM_021239025
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000021211   ⟸   ENSHGLT00000021415
RefSeq Acc Id: ENSHGLP00000021210   ⟸   ENSHGLT00000021414


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015157 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021415 ENTREZGENE
NCBI Gene Znf217 ENTREZGENE