Fibcd1 (fibrinogen C domain containing 1) - Rat Genome Database

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Gene: Fibcd1 (fibrinogen C domain containing 1) Heterocephalus glaber
Analyze
Symbol: Fibcd1
Name: fibrinogen C domain containing 1
RGD ID: 18908646
Description: ENCODES a protein that exhibits chitin binding (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); genetic disease (ortholog); primary coenzyme Q10 deficiency 7 (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibrinogen C domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,845,086 - 4,867,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,845,036 - 4,867,509 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fibcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,845,086 - 4,867,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,845,036 - 4,867,509 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FIBCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389130,902,440 - 130,940,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9130,902,438 - 130,939,286 (-)EnsemblGRCh38hg38GRCh38
GRCh379133,777,827 - 133,814,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,767,722 - 132,804,058 (-)NCBINCBI36Build 36hg18NCBI36
Build 349130,807,454 - 130,843,791NCBI
Celera9104,316,112 - 104,352,719 (-)NCBICelera
Cytogenetic Map9q34.12NCBI
HuRef9103,264,491 - 103,300,922 (-)NCBIHuRef
CHM1_19133,926,437 - 133,963,067 (-)NCBICHM1_1
T2T-CHM13v2.09143,107,312 - 143,145,777 (-)NCBIT2T-CHM13v2.0
Fibcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,703,302 - 31,736,976 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,703,302 - 31,736,017 (-)EnsemblGRCm39 Ensembl
GRCm38231,813,290 - 31,846,964 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,813,290 - 31,846,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37231,668,810 - 31,701,525 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,635,303 - 31,667,975 (-)NCBIMGSCv36mm8
Celera231,515,976 - 31,548,494 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.89NCBI
Fibcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,490,459 - 35,524,142 (-)NCBIGRCr8
mRatBN7.2315,092,682 - 15,126,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,092,681 - 15,126,399 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,166,159 - 18,199,885 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,751,162 - 26,784,888 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,998,520 - 25,032,198 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,365,866 - 9,399,578 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,366,053 - 9,396,450 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,357,857 - 15,391,567 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,916,777 - 10,950,489 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera39,840,400 - 9,874,215 (-)NCBICelera
Cytogenetic Map3p12NCBI
Fibcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513808,056 - 835,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955513810,927 - 835,106 (-)NCBIChiLan1.0ChiLan1.0
FIBCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,415,773 - 8,454,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,418,116 - 8,457,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,018,681 - 102,058,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,668,147 - 130,695,731 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,668,147 - 130,695,731 (-)Ensemblpanpan1.1panPan2
FIBCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,073,859 - 53,106,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,073,027 - 53,103,937 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,274,049 - 52,306,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,974,471 - 54,006,794 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,974,468 - 54,006,797 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,752,132 - 52,784,400 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,072,651 - 53,104,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,165,569 - 53,197,888 (+)NCBIUU_Cfam_GSD_1.0
Fibcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,061,694 - 198,093,425 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,830,219 - 17,862,057 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,830,895 - 17,861,952 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FIBCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,918,251 - 270,956,347 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11270,919,793 - 270,956,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21304,844,633 - 304,879,260 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FIBCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,205,830 - 7,246,315 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl127,206,456 - 7,242,528 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,224,261 - 8,262,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004849101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01040446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000015165   ⟹   ENSHGLP00000015014
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247604,845,086 - 4,867,220 (+)Ensembl
RefSeq Acc Id: XM_004849101   ⟹   XP_004849158
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,845,036 - 4,867,509 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015014
RefSeq Acc Id: XP_004849158   ⟸   XM_004849101
- UniProtKB: G5AT59 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015014   ⟸   ENSHGLT00000015165


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010751 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015165 ENTREZGENE
Gene3D-CATH Gamma Fibrinogen, chain A, domain 1 UniProtKB/TrEMBL
InterPro Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
NCBI Gene Fibcd1 ENTREZGENE
PANTHER FIBRINOGEN C DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  FIBRINOGEN/TENASCIN/ANGIOPOEITIN UniProtKB/TrEMBL
Pfam Fibrinogen_C UniProtKB/TrEMBL
PROSITE FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
SMART FBG UniProtKB/TrEMBL
Superfamily-SCOP Fibrinogen C-terminal domain-like UniProtKB/TrEMBL
UniProt G5AT59 ENTREZGENE, UniProtKB/TrEMBL