Plscr3 (phospholipid scramblase 3) - Rat Genome Database

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Gene: Plscr3 (phospholipid scramblase 3) Heterocephalus glaber
Analyze
Symbol: Plscr3
Name: phospholipid scramblase 3
RGD ID: 18908589
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); lead ion binding (ortholog); INVOLVED IN apoptotic process (ortholog); cardiolipin biosynthetic process (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,003,626 - 10,008,879 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,003,626 - 10,008,457 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plscr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,003,626 - 10,008,879 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,003,626 - 10,008,457 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PLSCR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,389,727 - 7,394,525 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,389,727 - 7,394,842 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,293,046 - 7,297,844 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,233,779 - 7,238,567 (-)NCBINCBI36Build 36hg18NCBI36
Build 34177,233,778 - 7,238,567NCBI
Celera177,318,970 - 7,323,756 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,187,093 - 7,192,209 (-)NCBIHuRef
CHM1_1177,302,138 - 7,307,254 (-)NCBICHM1_1
T2T-CHM13v2.0177,293,769 - 7,298,567 (-)NCBIT2T-CHM13v2.0
Plscr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,734,937 - 69,742,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,737,202 - 69,742,884 (+)EnsemblGRCm39 Ensembl
GRCm381169,846,372 - 69,852,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,846,376 - 69,852,058 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,659,874 - 69,665,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,662,871 - 69,668,253 (+)NCBIMGSCv36mm8
MGSCv361170,430,783 - 70,436,165 (+)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.9NCBI
Plscr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,064,349 - 55,070,120 (+)NCBIGRCr8
mRatBN7.21054,566,556 - 54,573,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,566,873 - 54,578,709 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,229,273 - 59,233,790 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,717,840 - 58,722,358 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,225,508 - 54,230,021 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,452,632 - 56,458,390 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,453,877 - 56,458,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,198,862 - 56,203,511 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,687,086 - 56,691,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,700,708 - 56,705,224 (+)NCBI
Celera1053,721,008 - 53,725,523 (+)NCBICelera
Cytogenetic Map10q24NCBI
Plscr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,535,261 - 9,539,738 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,534,462 - 9,539,738 (+)NCBIChiLan1.0ChiLan1.0
PLSCR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,986,705 - 14,992,685 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,952,529 - 16,957,410 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,423,903 - 7,429,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,410,009 - 7,414,824 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,410,668 - 7,414,409 (-)Ensemblpanpan1.1panPan2
PLSCR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,326,798 - 32,332,076 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,327,475 - 32,331,401 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,464,747 - 32,504,691 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,432,131 - 32,472,263 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,432,132 - 32,436,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,397,567 - 32,437,497 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,356,333 - 32,396,229 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,533,376 - 32,573,497 (-)NCBIUU_Cfam_GSD_1.0
Plscr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,200,566 - 47,205,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595672,642 - 679,622 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595674,754 - 679,979 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLSCR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,719,064 - 52,724,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,719,060 - 52,724,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,937,792 - 54,950,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLSCR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,765,320 - 6,770,568 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,763,096 - 6,770,092 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,638,098 - 14,643,259 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026969   ⟹   ENSHGLP00000026731
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478610,003,626 - 10,008,879 (-)Ensembl
RefSeq Acc Id: XM_013076836   ⟹   XP_012932290
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,003,626 - 10,008,457 (-)NCBI
RefSeq Acc Id: XM_021238304   ⟹   XP_021093963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,003,626 - 10,008,457 (-)NCBI
RefSeq Acc Id: XM_021238305   ⟹   XP_021093964
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,003,626 - 10,008,457 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012932290 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093963 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093964 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04477 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026731
Reference Protein Sequences
RefSeq Acc Id: XP_021093963   ⟸   XM_021238304
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021093964   ⟸   XM_021238305
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012932290   ⟸   XM_013076836
- Peptide Label: isoform X1
- UniProtKB: G5B5B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026731   ⟸   ENSHGLT00000026969


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019015 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026969 ENTREZGENE
InterPro Scramblase UniProtKB/TrEMBL
KEGG Report hgl:101719533 UniProtKB/TrEMBL
NCBI Gene Plscr3 ENTREZGENE
PANTHER PHOSPHOLIPID SCRAMBLASE 3 UniProtKB/TrEMBL
  PTHR23248 UniProtKB/TrEMBL
Pfam Scramblase UniProtKB/TrEMBL
UniProt G5B5B6 ENTREZGENE, UniProtKB/TrEMBL