Skor1 (SKI family transcriptional corepressor 1) - Rat Genome Database

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Gene: Skor1 (SKI family transcriptional corepressor 1) Heterocephalus glaber
Analyze
Symbol: Skor1
Name: SKI family transcriptional corepressor 1
RGD ID: 18908558
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); SMAD binding (ortholog); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247815,200,680 - 5,210,663 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247815,201,672 - 5,210,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Skor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247815,200,680 - 5,210,663 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247815,201,672 - 5,210,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SKOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381567,825,509 - 67,834,582 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1567,819,704 - 67,834,582 (+)EnsemblGRCh38hg38GRCh38
GRCh371568,117,847 - 68,126,920 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361565,904,995 - 65,913,228 (+)NCBINCBI36Build 36hg18NCBI36
Celera1545,005,997 - 45,014,230 (+)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1544,945,999 - 44,960,148 (+)NCBIHuRef
CHM1_11568,230,102 - 68,244,248 (+)NCBICHM1_1
T2T-CHM13v2.01565,647,348 - 65,656,419 (+)NCBIT2T-CHM13v2.0
Skor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39963,045,446 - 63,056,243 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl963,045,452 - 63,056,243 (-)EnsemblGRCm39 Ensembl
GRCm38963,138,164 - 63,148,961 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl963,138,170 - 63,148,961 (-)EnsemblGRCm38mm10GRCm38
MGSCv37962,985,971 - 62,996,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36962,936,180 - 62,944,986 (-)NCBIMGSCv36mm8
Celera960,357,337 - 60,368,128 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.96NCBI
Skor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8872,494,554 - 72,505,127 (-)NCBIGRCr8
mRatBN7.2863,599,153 - 63,609,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl863,599,165 - 63,607,756 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx869,114,299 - 69,124,877 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0867,386,749 - 67,397,335 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0865,256,874 - 65,267,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0868,029,930 - 68,040,504 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl868,030,621 - 68,038,533 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0867,758,822 - 67,767,082 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4867,287,385 - 67,298,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1867,306,451 - 67,327,821 (-)NCBI
Celera863,012,911 - 63,023,485 (-)NCBICelera
Cytogenetic Map8q24NCBI
Skor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554508,185,523 - 8,193,777 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554508,184,843 - 8,195,626 (-)NCBIChiLan1.0ChiLan1.0
SKOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21657,080,906 - 57,091,643 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11561,254,306 - 61,265,620 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01546,722,712 - 46,787,689 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11565,042,184 - 65,057,363 (+)NCBIpanpan1.1PanPan1.1panPan2
SKOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13031,935,860 - 31,948,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3031,938,869 - 31,948,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3031,874,169 - 31,883,276 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03032,135,179 - 32,144,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3032,135,179 - 32,144,339 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13032,063,551 - 32,072,659 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03032,125,176 - 32,134,299 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03032,370,781 - 32,379,895 (+)NCBIUU_Cfam_GSD_1.0
Skor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640109,895,822 - 109,906,737 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647127,745,912 - 27,754,058 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647127,745,912 - 27,754,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,751,321 - 165,762,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,753,522 - 165,766,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21183,513,391 - 183,539,067 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12615,667,477 - 15,679,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2615,667,479 - 15,676,427 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048125,791,908 - 125,801,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021237194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01059000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000024483   ⟹   ENSHGLP00000024264
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247815,200,680 - 5,210,663 (-)Ensembl
RefSeq Acc Id: XM_021237194   ⟹   XP_021092853
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247815,201,672 - 5,210,314 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021092853 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024264
Reference Protein Sequences
RefSeq Acc Id: XP_021092853   ⟸   XM_021237194
RefSeq Acc Id: ENSHGLP00000024264   ⟸   ENSHGLT00000024483


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017297 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024483 ENTREZGENE
NCBI Gene Skor1 ENTREZGENE