Amer1 (APC membrane recruitment protein 1) - Rat Genome Database

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Gene: Amer1 (APC membrane recruitment protein 1) Heterocephalus glaber
Analyze
Symbol: Amer1
Name: APC membrane recruitment protein 1
RGD ID: 18908554
Description: ENCODES a protein that exhibits beta-catenin destruction complex binding (ortholog); INVOLVED IN adipose tissue development (ortholog); bone development (ortholog); kidney development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cleft palate (ortholog); colorectal cancer (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein FAM123B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248982,724,042 - 2,727,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248982,704,322 - 2,731,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Amer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248982,724,042 - 2,727,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248982,704,322 - 2,731,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AMER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X64,185,117 - 64,205,708 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX64,185,117 - 64,205,708 (-)EnsemblGRCh38hg38GRCh38
GRCh37X63,404,997 - 63,425,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X63,321,722 - 63,342,349 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX63,751,829 - 63,772,456 (-)NCBICelera
Cytogenetic MapXq11.2NCBI
HuRefX57,229,959 - 57,249,860 (-)NCBIHuRef
CHM1_1X63,297,445 - 63,318,066 (-)NCBICHM1_1
T2T-CHM13v2.0X62,610,394 - 62,630,983 (-)NCBIT2T-CHM13v2.0
Amer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X94,463,919 - 94,488,446 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX94,463,924 - 94,488,478 (-)EnsemblGRCm39 Ensembl
GRCm38X95,420,313 - 95,444,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX95,420,318 - 95,444,872 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X92,615,652 - 92,640,179 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X91,630,089 - 91,647,543 (-)NCBIMGSCv36mm8
CeleraX82,446,271 - 82,470,781 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.99NCBI
Amer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X64,310,492 - 64,326,377 (-)NCBIGRCr8
mRatBN7.2X60,300,595 - 60,316,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX60,295,751 - 60,316,440 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX61,770,840 - 61,786,727 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X65,271,355 - 65,287,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X62,850,325 - 62,866,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X64,686,620 - 64,702,504 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX64,686,623 - 64,702,441 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X65,585,784 - 65,601,668 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X82,986,081 - 83,001,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX60,720,570 - 60,736,455 (-)NCBICelera
Cytogenetic MapXq22NCBI
Amer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554754,463,023 - 4,466,406 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554754,451,094 - 4,470,750 (+)NCBIChiLan1.0ChiLan1.0
AMER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X63,718,058 - 63,739,349 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X63,721,664 - 63,742,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X53,309,868 - 53,331,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X63,396,335 - 63,412,289 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX63,396,392 - 63,399,802 (-)Ensemblpanpan1.1panPan2
AMER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X49,426,228 - 49,449,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX40,221,607 - 40,284,593 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X49,710,327 - 49,773,348 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX49,753,632 - 49,773,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X48,366,572 - 48,429,558 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X49,665,093 - 49,728,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X49,118,973 - 49,181,979 (-)NCBIUU_Cfam_GSD_1.0
Amer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X52,699,841 - 52,721,120 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366353,478,598 - 3,482,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366353,465,473 - 3,482,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX50,844,683 - 50,864,032 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X50,842,049 - 50,864,105 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X57,264,271 - 57,283,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AMER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X54,568,751 - 54,591,284 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX54,573,476 - 54,576,880 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660831,826,025 - 1,847,827 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000028567   ⟹   ENSHGLP00000028171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248982,724,042 - 2,727,419 (+)Ensembl
RefSeq Acc Id: XM_004872261   ⟹   XP_004872318
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248982,704,322 - 2,731,918 (+)NCBI
RefSeq Acc Id: XM_004872262   ⟹   XP_004872319
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248982,704,322 - 2,731,918 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872318 (Get FASTA)   NCBI Sequence Viewer  
  XP_004872319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16607 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028171
  ENSHGLP00100027005
  ENSHGLP00100035856
  ENSHGLP00100047245
  ENSHGLP00100053817
  ENSHGLP00100061512
Reference Protein Sequences
RefSeq Acc Id: XP_004872318   ⟸   XM_004872261
- UniProtKB: G5C4Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872319   ⟸   XM_004872262
- UniProtKB: G5C4Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000028171   ⟸   ENSHGLT00000028567


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020357 Ensembl, ENTREZGENE
  ENSHGLG00100020013 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000028567 ENTREZGENE
  ENSHGLT00100027370 UniProtKB/TrEMBL
  ENSHGLT00100068861 UniProtKB/TrEMBL
  ENSHGLT00100070791 UniProtKB/TrEMBL
  ENSHGLT00100074616 UniProtKB/TrEMBL
  ENSHGLT00100082328 UniProtKB/TrEMBL
InterPro AMER UniProtKB/TrEMBL
KEGG Report hgl:101717671 UniProtKB/TrEMBL
NCBI Gene Amer1 ENTREZGENE
PANTHER APC MEMBRANE RECRUITMENT PROTEIN 1 UniProtKB/TrEMBL
  PTHR22237 UniProtKB/TrEMBL
Pfam WTX UniProtKB/TrEMBL
UniProt G5C4Z6 ENTREZGENE, UniProtKB/TrEMBL