Rad9b (RAD9 checkpoint clamp component B) - Rat Genome Database

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Gene: Rad9b (RAD9 checkpoint clamp component B) Heterocephalus glaber
Analyze
Symbol: Rad9b
Name: RAD9 checkpoint clamp component B
RGD ID: 18908301
Description: INVOLVED IN cellular response to ionizing radiation (inferred); DNA damage checkpoint signaling (inferred); DNA repair (inferred); ASSOCIATED WITH genetic disease (ortholog); neural tube defect (ortholog); FOUND IN checkpoint clamp complex (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell cycle checkpoint control protein RAD9B; RAD9 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,360,240 - 21,399,075 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rad9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,360,240 - 21,399,075 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAD9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812110,502,331 - 110,533,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12110,501,655 - 110,533,556 (+)EnsemblGRCh38hg38GRCh38
GRCh3712110,940,136 - 110,971,361 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612109,424,483 - 109,454,274 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412109,402,819 - 109,432,609NCBI
Celera12110,566,764 - 110,596,591 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12107,958,134 - 107,988,078 (+)NCBIHuRef
CHM1_112110,907,815 - 110,937,557 (+)NCBICHM1_1
T2T-CHM13v2.012110,480,028 - 110,511,250 (+)NCBIT2T-CHM13v2.0
Rad9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,461,286 - 122,492,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,461,286 - 122,492,296 (-)EnsemblGRCm39 Ensembl
GRCm385122,323,223 - 122,354,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,323,223 - 122,354,233 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,775,517 - 122,804,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,586,125 - 122,614,812 (-)NCBIMGSCv36mm8
Celera5119,407,984 - 119,436,658 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.3NCBI
Rad9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,878,221 - 39,909,254 (+)NCBIGRCr8
mRatBN7.21234,217,868 - 34,248,380 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,218,024 - 34,248,372 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,390,430 - 35,420,766 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,001,842 - 36,032,012 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,054,164 - 35,084,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,699,076 - 39,731,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,699,181 - 39,729,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,579,810 - 41,613,266 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,412,463 - 35,443,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11235,275,850 - 35,306,721 (+)NCBI
Celera1235,888,883 - 35,919,190 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rad9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,405,608 - 7,440,995 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,405,520 - 7,459,240 (+)NCBIChiLan1.0ChiLan1.0
RAD9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,562,938 - 118,594,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,559,388 - 118,590,857 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012108,072,061 - 108,103,338 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112111,467,881 - 111,497,803 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12111,467,845 - 111,498,350 (+)Ensemblpanpan1.1panPan2
RAD9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,309,384 - 8,333,414 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,309,592 - 8,343,424 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,473,060 - 8,496,997 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,567,351 - 8,591,512 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1268,526,316 - 8,550,455 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,585,107 - 8,609,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,540,581 - 8,564,740 (+)NCBIUU_Cfam_GSD_1.0
Rad9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,989,042 - 156,020,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365583,459,223 - 3,489,413 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365583,462,187 - 3,489,741 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,869,684 - 31,903,823 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11431,869,570 - 31,903,485 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21433,791,210 - 33,825,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,738,247 - 105,772,539 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11105,738,867 - 105,772,002 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037139,342,617 - 139,381,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010136   ⟹   ENSHGLP00000010025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474721,360,240 - 21,399,075 (-)Ensembl
RefSeq Acc Id: XM_004843816   ⟹   XP_004843873
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBI
RefSeq Acc Id: XM_021257497   ⟹   XP_021113156
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBI
RefSeq Acc Id: XM_021257498   ⟹   XP_021113157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBI
RefSeq Acc Id: XM_021257499   ⟹   XP_021113158
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,360,253 - 21,399,223 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843873 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113156 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113157 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010025
Reference Protein Sequences
RefSeq Acc Id: XP_004843873   ⟸   XM_004843816
- Peptide Label: isoform X2
- UniProtKB: G5AWM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113158   ⟸   XM_021257499
- Peptide Label: isoform X4
- UniProtKB: G5AWM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113156   ⟸   XM_021257497
- Peptide Label: isoform X1
- UniProtKB: G5AWM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113157   ⟸   XM_021257498
- Peptide Label: isoform X3
- UniProtKB: G5AWM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010025   ⟸   ENSHGLT00000010136


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007199 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010136 ENTREZGENE
Gene3D-CATH 3.70.10.10 UniProtKB/TrEMBL
InterPro DNA_clamp_sf UniProtKB/TrEMBL
  Rad9 UniProtKB/TrEMBL
  Rad9/Ddc1 UniProtKB/TrEMBL
NCBI Gene Rad9b ENTREZGENE
PANTHER CELL CYCLE CHECKPOINT CONTROL PROTEIN RAD9B UniProtKB/TrEMBL
  DNA REPAIR PROTEIN RAD9 UniProtKB/TrEMBL
Pfam Rad9 UniProtKB/TrEMBL
PIRSF Cell_cycle_RAD9 UniProtKB/TrEMBL
Superfamily-SCOP DNA clamp UniProtKB/TrEMBL
UniProt G5AWM1 ENTREZGENE, UniProtKB/TrEMBL