Pard6g (par-6 family cell polarity regulator gamma) - Rat Genome Database

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Gene: Pard6g (par-6 family cell polarity regulator gamma) Heterocephalus glaber
Analyze
Symbol: Pard6g
Name: par-6 family cell polarity regulator gamma
RGD ID: 18908273
Description: INVOLVED IN cell division (inferred); centrosome cycle (inferred); establishment or maintenance of cell polarity (inferred); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: partitioning defective 6 homolog gamma; Partitioning defective 6-like protein gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480695,448 - 182,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480695,478 - 182,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Pard6g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480695,448 - 182,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480695,478 - 182,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PARD6G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381880,157,232 - 80,247,514 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1880,157,232 - 80,247,514 (-)EnsemblGRCh38hg38GRCh38
GRCh371877,915,115 - 78,005,397 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361876,016,106 - 76,106,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 341876,016,113 - 76,106,388NCBI
Celera1874,687,746 - 74,733,595 (-)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1874,536,861 - 74,582,599 (-)NCBIHuRef
CHM1_11877,910,128 - 78,000,443 (-)NCBICHM1_1
T2T-CHM13v2.01880,433,688 - 80,523,977 (-)NCBIT2T-CHM13v2.0
Pard6g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,090,045 - 80,162,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,090,105 - 80,162,854 (+)EnsemblGRCm39 Ensembl
GRCm381880,046,830 - 80,119,640 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,046,890 - 80,119,639 (+)EnsemblGRCm38mm10GRCm38
MGSCv371880,243,634 - 80,316,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,209,011 - 80,281,439 (+)NCBIMGSCv36mm8
Celera1881,166,862 - 81,239,081 (+)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.22NCBI
Pard6g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81875,772,992 - 75,840,041 (+)NCBIGRCr8
mRatBN7.21873,497,992 - 73,565,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,498,021 - 73,565,029 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,600,547 - 75,665,304 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,269,890 - 76,334,651 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,114,922 - 74,179,760 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01876,559,877 - 76,627,843 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,559,811 - 76,628,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01872,178,893 - 72,246,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41876,942,285 - 77,007,923 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,015,557 - 77,081,196 (+)NCBI
Celera1872,161,119 - 72,225,970 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
Pard6g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540263,374,837 - 63,459,333 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540263,374,837 - 63,459,327 (-)NCBIChiLan1.0ChiLan1.0
PARD6G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21797,797,864 - 97,892,398 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11883,490,483 - 83,585,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01873,806,710 - 73,904,494 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11877,121,496 - 77,207,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1877,122,483 - 77,167,659 (-)Ensemblpanpan1.1panPan2
PARD6G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11478,310 - 567,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1497,071 - 565,905 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,489,490 - 1,570,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01284,304 - 365,294 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11338,628 - 419,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01283,911 - 364,854 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01455,022 - 536,010 (+)NCBIUU_Cfam_GSD_1.0
Pard6g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494414,729,374 - 14,793,735 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493661650,498 - 115,613 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493661650,504 - 115,679 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARD6G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6128,162,600 - 128,250,663 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16128,161,610 - 128,250,708 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21309,824,554 - 309,959,065 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PARD6G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11832,925 - 124,001 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606026,198,604 - 26,290,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002360   ⟹   ENSHGLP00000002311
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480695,448 - 182,925 (+)Ensembl
RefSeq Acc Id: XM_004861900   ⟹   XP_004861957
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480695,478 - 182,374 (+)NCBI
RefSeq Acc Id: XM_021242144   ⟹   XP_021097803
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480695,685 - 182,374 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861957 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097803 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002311
  ENSHGLP00100050901
GenBank Protein JAO02196 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004861957   ⟸   XM_004861900
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K7A1 (UniProtKB/TrEMBL),   G5AKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097803   ⟸   XM_021242144
- Peptide Label: isoform X2
- UniProtKB: G5AKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002311   ⟸   ENSHGLT00000002360


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001755 Ensembl, ENTREZGENE
  ENSHGLG00100043879 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002360 ENTREZGENE
  ENSHGLT00100055575 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro PB1_dom UniProtKB/TrEMBL
  PB1_Par6 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report hgl:101723191 UniProtKB/TrEMBL
NCBI Gene Pard6g ENTREZGENE
PANTHER PAR-6-RELATED UniProtKB/TrEMBL
  PTHR14102:SF3 UniProtKB/TrEMBL
Pfam PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP CAD & PB1 domains UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A0P6K7A1 ENTREZGENE, UniProtKB/TrEMBL
  G5AKB0 ENTREZGENE, UniProtKB/TrEMBL