Lamc2 (laminin subunit gamma 2) - Rat Genome Database

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Gene: Lamc2 (laminin subunit gamma 2) Heterocephalus glaber
Analyze
Symbol: Lamc2
Name: laminin subunit gamma 2
RGD ID: 18907829
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); amelogenesis imperfecta (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN cell cortex (ortholog); extracellular space (ortholog); laminin-2 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: laminin subunit gamma-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481410,476,323 - 10,536,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481410,475,629 - 10,536,694 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lamc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481410,476,323 - 10,536,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481410,475,629 - 10,536,694 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LAMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381183,186,264 - 183,258,968 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1183,186,238 - 183,245,127 (+)EnsemblGRCh38hg38GRCh38
GRCh371183,155,399 - 183,214,262 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361181,421,797 - 181,480,885 (+)NCBINCBI36Build 36hg18NCBI36
Celera1156,266,276 - 156,325,361 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1154,390,994 - 154,450,096 (+)NCBIHuRef
CHM1_11184,578,284 - 184,637,373 (+)NCBICHM1_1
T2T-CHM13v2.01182,538,023 - 182,618,306 (+)NCBIT2T-CHM13v2.0
Lamc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391152,998,502 - 153,062,193 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1152,998,502 - 153,062,193 (-)EnsemblGRCm39 Ensembl
GRCm381153,122,756 - 153,186,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,122,756 - 153,186,447 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,969,886 - 155,033,577 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,884,977 - 154,948,235 (-)NCBIMGSCv36mm8
Celera1155,543,898 - 155,607,447 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.26NCBI
Lamc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81367,835,199 - 67,894,694 (-)NCBIGRCr8
mRatBN7.21365,284,664 - 65,344,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1365,284,664 - 65,344,200 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1367,888,292 - 67,947,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01369,176,423 - 69,235,915 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01366,427,734 - 66,487,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01370,566,643 - 70,632,126 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1370,566,643 - 70,626,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01375,532,726 - 75,598,249 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41368,151,074 - 68,211,117 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11368,192,400 - 68,195,295 (-)NCBI
Celera1365,189,676 - 65,249,215 (-)NCBICelera
Cytogenetic Map13q21NCBI
Lamc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540622,020,024 - 22,075,942 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540622,020,330 - 22,074,271 (+)NCBIChiLan1.0ChiLan1.0
LAMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2166,485,132 - 66,565,152 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,164,250 - 66,248,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,697,084 - 158,763,209 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,862,789 - 162,921,864 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,862,785 - 162,921,864 (+)Ensemblpanpan1.1panPan2
LAMC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1716,543,541 - 16,625,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl716,569,086 - 16,624,085 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha716,155,023 - 16,210,026 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0716,274,543 - 16,357,226 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl716,299,574 - 16,357,226 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1716,209,554 - 16,264,409 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0716,318,705 - 16,373,685 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0716,449,666 - 16,504,660 (+)NCBIUU_Cfam_GSD_1.0
Lamc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934488,742,049 - 88,800,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364816,588,865 - 6,647,188 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364816,588,797 - 6,647,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9124,435,807 - 124,495,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19124,427,545 - 124,499,672 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LAMC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12546,133,079 - 46,199,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2546,131,827 - 46,199,753 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605547,351,190 - 47,417,763 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000026386   ⟹   ENSHGLP00000026154
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462481410,476,323 - 10,536,724 (-)Ensembl
RefSeq Acc Id: XM_021242895   ⟹   XP_021098554
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462481410,475,629 - 10,536,694 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021098554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026154
GenBank Protein JAN99021 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021098554   ⟸   XM_021242895
- UniProtKB: A0A0N8ETE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026154   ⟸   ENSHGLT00000026386


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018611 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026386 ENTREZGENE
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV UniProtKB/TrEMBL
NCBI Gene Lamc2 ENTREZGENE
PANTHER LAMININ SUBUNIT GAMMA-2 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_B UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamB UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A0N8ETE4 ENTREZGENE, UniProtKB/TrEMBL