Hnrnpa1 (heterogeneous nuclear ribonucleoprotein A1) - Rat Genome Database

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Gene: Hnrnpa1 (heterogeneous nuclear ribonucleoprotein A1) Heterocephalus glaber
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Symbol: Hnrnpa1
Name: heterogeneous nuclear ribonucleoprotein A1
RGD ID: 18907826
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA/DNA annealing activity (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 20 (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleoplasmic periphery of the nuclear pore complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,314,249 - 2,318,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,314,197 - 2,320,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hnrnpa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,314,249 - 2,318,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,314,197 - 2,320,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HNRNPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,280,726 - 54,287,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,280,193 - 54,287,088 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,674,510 - 54,680,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,960,755 - 52,965,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 341252,960,754 - 52,965,297NCBI
Celera1254,326,467 - 54,331,009 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,713,759 - 51,718,301 (+)NCBIHuRef
CHM1_11254,641,226 - 54,645,768 (+)NCBICHM1_1
T2T-CHM13v2.01254,247,303 - 54,253,664 (+)NCBIT2T-CHM13v2.0
Hnrnpa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,148,840 - 103,155,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15103,148,859 - 103,155,119 (+)EnsemblGRCm39 Ensembl
GRCm3815103,239,943 - 103,246,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,240,432 - 103,246,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,070,863 - 103,075,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615103,068,466 - 103,072,989 (+)NCBIMGSCv36mm8
Celera15105,402,021 - 105,406,544 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.58NCBI
Hnrnpa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,253,633 - 136,260,085 (+)NCBIGRCr8
mRatBN7.27134,375,318 - 134,381,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,375,150 - 134,381,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7136,130,862 - 136,135,162 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,360,240 - 138,364,540 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,346,358 - 138,350,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,865,302 - 144,871,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,865,608 - 144,871,585 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,647,071 - 142,652,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47142,150,229 - 142,154,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17142,230,417 - 142,234,709 (+)NCBI
Celera7130,801,278 - 130,805,569 (+)NCBICelera
Cytogenetic Map7q36NCBI
Hnrnpa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554581,530,163 - 1,536,874 (+)NCBIChiLan1.0ChiLan1.0
HNRNPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,884,192 - 39,891,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,456,900 - 34,463,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,182,164 - 35,188,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensemblpanpan1.1panPan2
HNRNPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,013,459 - 1,020,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,235,341 - 45,240,080 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,012,273 - 1,017,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,031,242 - 1,035,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,010,967 - 1,017,580 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,639,146 - 45,643,882 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,677,106 - 61,683,541 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493651211,481,017 - 11,487,737 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,485,096 - 19,491,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,485,033 - 19,491,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,329,539 - 20,334,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,397,173 - 50,403,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,396,888 - 50,400,802 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,638,486 - 195,645,432 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004352   ⟹   ENSHGLP00000004292
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249042,314,249 - 2,318,791 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000004353   ⟹   ENSHGLP00000004293
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249042,314,250 - 2,318,791 (+)Ensembl
RefSeq Acc Id: XM_004872790   ⟹   XP_004872847
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249042,314,197 - 2,318,791 (+)NCBI
RefSeq Acc Id: XM_004872791   ⟹   XP_004872848
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249042,314,197 - 2,318,791 (+)NCBI
RefSeq Acc Id: XR_206385
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249042,314,197 - 2,320,900 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872847 (Get FASTA)   NCBI Sequence Viewer  
  XP_004872848 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004292
  ENSHGLP00000004293
  ENSHGLP00100021708
GenBank Protein JAO01745 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004872847   ⟸   XM_004872790
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JBQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872848   ⟸   XM_004872791
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QDK3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004293   ⟸   ENSHGLT00000004353
Ensembl Acc Id: ENSHGLP00000004292   ⟸   ENSHGLT00000004352


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003139 Ensembl, ENTREZGENE
  ENSHGLG00100015974 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004352 ENTREZGENE
  ENSHGLT00000004353 ENTREZGENE
  ENSHGLT00100021934 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNPA1 UniProtKB/TrEMBL
  hnRNPA1/3_RRM2 UniProtKB/TrEMBL
  hnRNPA1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101711324 UniProtKB/TrEMBL
NCBI Gene Hnrnpa1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED UniProtKB/TrEMBL
  HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/TrEMBL
Pfam HnRNPA1 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0P6JBQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QDK3 ENTREZGENE, UniProtKB/TrEMBL