Pin4 (peptidylprolyl cis/trans isomerase, NIMA-interacting 4) - Rat Genome Database

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Gene: Pin4 (peptidylprolyl cis/trans isomerase, NIMA-interacting 4) Heterocephalus glaber
Analyze
Symbol: Pin4
Name: peptidylprolyl cis/trans isomerase, NIMA-interacting 4
RGD ID: 18907744
Description: ENCODES a protein that exhibits bent DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN rRNA processing (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); mitochondrial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249032,424,620 - 2,443,648 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249032,424,424 - 2,439,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pin4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249032,424,620 - 2,443,648 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249032,424,424 - 2,439,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PIN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X72,181,676 - 72,263,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX72,181,353 - 72,302,926 (+)EnsemblGRCh38hg38GRCh38
GRCh37X71,401,526 - 71,483,814 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X71,318,251 - 71,334,666 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X71,184,546 - 71,200,961NCBI
CeleraX71,749,520 - 71,827,026 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX65,156,426 - 65,238,895 (+)NCBIHuRef
CHM1_1X71,294,590 - 71,376,836 (+)NCBICHM1_1
T2T-CHM13v2.0X70,614,580 - 70,696,859 (+)NCBIT2T-CHM13v2.0
Pin4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,163,075 - 101,171,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,163,053 - 101,171,275 (+)EnsemblGRCm39 Ensembl
GRCm38X102,119,469 - 102,127,673 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,119,447 - 102,127,669 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X99,314,804 - 99,323,012 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X98,322,182 - 98,334,891 (+)NCBIMGSCv36mm8
CeleraX89,031,383 - 89,039,555 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX45.14NCBI
Pin4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X71,272,034 - 71,278,676 (+)NCBIGRCr8
mRatBN7.2X67,232,066 - 67,238,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX67,232,081 - 67,238,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,213,206 - 52,213,661 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X72,215,663 - 72,222,306 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,719,086 - 50,719,541 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X72,004,413 - 72,011,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX72,004,482 - 72,011,664 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X72,849,341 - 72,856,082 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X90,182,412 - 90,188,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX67,585,854 - 67,592,558 (+)NCBICelera
Cytogenetic MapXq22NCBI
Pin4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547511,562,982 - 11,581,042 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547511,563,379 - 11,577,133 (+)NCBIChiLan1.0ChiLan1.0
PIN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X71,855,007 - 71,937,437 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X71,858,639 - 71,941,044 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X61,418,250 - 61,502,191 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X71,503,148 - 71,586,017 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX71,503,148 - 71,586,017 (+)Ensemblpanpan1.1panPan2
LOC100687619
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12817,935,504 - 17,935,947 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2818,105,658 - 18,106,071 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02818,424,158 - 18,424,571 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12817,959,442 - 17,959,855 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02817,996,740 - 17,997,153 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02818,128,344 - 18,128,757 (+)NCBIUU_Cfam_GSD_1.0
Pin4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X45,689,380 - 45,701,487 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493695936,136 - 48,508 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493695936,374 - 48,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX58,069,793 - 58,082,239 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X58,069,758 - 58,082,243 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X65,779,503 - 65,791,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X61,994,237 - 62,008,537 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660653,849,593 - 3,865,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022921   ⟹   ENSHGLP00000022707
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249032,424,620 - 2,443,648 (+)Ensembl
RefSeq Acc Id: XM_004872661   ⟹   XP_004872718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,424,581 - 2,439,815 (+)NCBI
RefSeq Acc Id: XM_021250525   ⟹   XP_021106184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,424,424 - 2,439,815 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872718 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106184 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08525 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022707
Reference Protein Sequences
RefSeq Acc Id: XP_021106184   ⟸   XM_021250525
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004872718   ⟸   XM_004872661
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000022707   ⟸   ENSHGLT00000022921


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016193 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022921 ENTREZGENE
NCBI Gene Pin4 ENTREZGENE