Hspa13 (heat shock protein family A (Hsp70) member 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hspa13 (heat shock protein family A (Hsp70) member 13) Heterocephalus glaber
Analyze
Symbol: Hspa13
Name: heat shock protein family A (Hsp70) member 13
RGD ID: 18907561
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent protein folding chaperone (inferred); nucleotide binding (inferred); INVOLVED IN protein folding (inferred); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Heat shock 70 kDa protein 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247452,840,513 - 2,852,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247452,841,736 - 2,851,844 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hspa13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247452,840,513 - 2,852,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247452,841,736 - 2,851,844 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HSPA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,371,115 - 14,383,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,371,115 - 14,383,484 (-)EnsemblGRCh38hg38GRCh38
GRCh372115,743,436 - 15,755,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362114,665,307 - 14,677,380 (-)NCBINCBI36Build 36hg18NCBI36
Build 342114,665,309 - 14,677,380NCBI
Celera21900,677 - 912,750 (-)NCBICelera
Cytogenetic Map21q11.2NCBI
HuRef211,113,800 - 1,125,871 (-)NCBIHuRef
CHM1_12115,303,921 - 15,315,993 (-)NCBICHM1_1
T2T-CHM13v2.02112,713,857 - 12,725,888 (-)NCBIT2T-CHM13v2.0
Hspa13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391675,552,078 - 75,564,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1675,542,319 - 75,563,992 (-)EnsemblGRCm39 Ensembl
GRCm381675,755,190 - 75,767,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1675,745,431 - 75,767,104 (-)EnsemblGRCm38mm10GRCm38
MGSCv371675,755,435 - 75,767,063 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361675,637,874 - 75,649,458 (-)NCBIMGSCv36mm8
Celera1675,974,819 - 75,986,466 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.36NCBI
Hspa13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,862,717 - 27,876,898 (-)NCBIGRCr8
mRatBN7.21114,375,669 - 14,389,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,373,275 - 14,389,895 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,001,434 - 23,015,613 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,727,804 - 15,741,983 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01114,895,675 - 14,909,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,146,515 - 14,160,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,144,130 - 14,160,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01117,802,649 - 17,816,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41114,521,734 - 14,535,915 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11114,521,609 - 14,535,915 (-)NCBI
Celera1114,388,645 - 14,402,826 (-)NCBICelera
Cytogenetic Map11p11NCBI
Hspa13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,195,308 - 16,206,100 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,195,366 - 16,205,371 (-)NCBIChiLan1.0ChiLan1.0
HSPA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22210,852,296 - 10,864,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1215,686,034 - 5,698,158 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0211,101,715 - 1,113,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12114,468,887 - 14,480,986 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2114,468,887 - 14,480,986 (-)Ensemblpanpan1.1panPan2
HSPA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,365,374 - 11,377,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,367,788 - 11,377,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3111,376,570 - 11,389,273 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03111,390,307 - 11,403,009 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3111,389,844 - 11,402,716 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13111,363,132 - 11,375,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,400,638 - 11,413,475 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03111,797,157 - 11,809,886 (-)NCBIUU_Cfam_GSD_1.0
Hspa13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,476,191 - 12,486,942 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,394,075 - 7,406,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,395,962 - 7,406,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,310,727 - 179,321,491 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,309,746 - 179,321,297 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213189,549,394 - 189,560,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,136,291 - 78,148,457 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,136,170 - 78,148,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605075,771,695 - 75,783,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021998   ⟹   ENSHGLP00000021788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247452,840,513 - 2,852,255 (-)Ensembl
RefSeq Acc Id: XM_004842200   ⟹   XP_004842257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247452,841,736 - 2,851,844 (-)NCBI
RefSeq Acc Id: XM_021256113   ⟹   XP_021111772
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247452,841,736 - 2,851,844 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842257 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111772 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04263 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021788
  ENSHGLP00000058501
  ENSHGLP00100051361
GenBank Protein JAN98231 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021111772   ⟸   XM_021256113
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004842257   ⟸   XM_004842200
- Peptide Label: isoform X1
- UniProtKB: G5B4Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021788   ⟸   ENSHGLT00000021998


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015563 Ensembl, ENTREZGENE
  ENSHGLG00000043774 UniProtKB/TrEMBL
  ENSHGLG00100045579 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021998 ENTREZGENE
  ENSHGLT00000090656 UniProtKB/TrEMBL
  ENSHGLT00100066115 UniProtKB/TrEMBL
Gene3D-CATH 3.30.30.30 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
  HSPA13 UniProtKB/TrEMBL
KEGG Report hgl:101712455 UniProtKB/TrEMBL
NCBI Gene Hspa13 ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 13 UniProtKB/TrEMBL
  PTHR19375 UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
PRINTS HEATSHOCK70 UniProtKB/TrEMBL
PROSITE HSP70_1 UniProtKB/TrEMBL
  HSP70_2 UniProtKB/TrEMBL
  HSP70_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt G5B4Q2 ENTREZGENE, UniProtKB/TrEMBL