Szrd1 (SUZ RNA binding domain containing 1) - Rat Genome Database

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Gene: Szrd1 (SUZ RNA binding domain containing 1) Heterocephalus glaber
Analyze
Symbol: Szrd1
Name: SUZ RNA binding domain containing 1
RGD ID: 18907548
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SUZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,472,426 - 2,500,251 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,472,771 - 2,500,136 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Szrd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,472,426 - 2,500,251 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,472,771 - 2,500,136 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SZRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,367,242 - 16,398,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,352,575 - 16,398,145 (+)EnsemblGRCh38hg38GRCh38
GRCh37116,693,737 - 16,724,640 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,566,307 - 16,595,451 (+)NCBINCBI36Build 36hg18NCBI36
Celera115,173,509 - 15,204,567 (+)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,210,907 - 15,242,024 (+)NCBIHuRef
CHM1_1116,492,192 - 16,523,316 (+)NCBICHM1_1
T2T-CHM13v2.0115,808,777 - 15,839,678 (+)NCBIT2T-CHM13v2.0
Szrd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,840,326 - 140,867,110 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,840,312 - 140,867,086 (-)EnsemblGRCm39 Ensembl
GRCm384141,112,978 - 141,139,799 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,113,001 - 141,139,775 (-)EnsemblGRCm38mm10GRCm38
MGSCv374140,668,930 - 140,695,711 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,385,091 - 140,411,872 (-)NCBIMGSCv36mm8
Celera4142,919,577 - 142,945,790 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.38NCBI
Szrd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,701,753 - 158,726,276 (-)NCBIGRCr8
mRatBN7.25153,418,748 - 153,443,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,418,748 - 153,443,252 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,107,432 - 156,131,960 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,880,706 - 157,905,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,869,890 - 157,894,418 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,638,259 - 159,662,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,638,259 - 159,662,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,350,635 - 163,375,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45159,973,091 - 159,997,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5151,783,141 - 151,807,636 (-)NCBICelera
Cytogenetic Map5q36NCBI
Szrd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,938,477 - 1,961,521 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,938,477 - 1,961,524 (-)NCBIChiLan1.0ChiLan1.0
SZRD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,522,897 - 210,554,087 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,771,526 - 209,802,605 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,504,491 - 15,535,571 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,495,288 - 16,525,404 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,495,288 - 16,525,404 (+)Ensemblpanpan1.1panPan2
SZRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,320,737 - 81,350,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,327,795 - 81,350,641 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,857,021 - 77,886,781 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,966,868 - 81,996,656 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,971,186 - 81,996,627 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,719,826 - 78,749,573 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,736,692 - 79,766,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,804,820 - 80,834,577 (-)NCBIUU_Cfam_GSD_1.0
Szrd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505838,002,281 - 38,027,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,826,997 - 3,852,668 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,827,077 - 3,852,675 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SZRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,459,138 - 75,485,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,459,124 - 75,485,326 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,774,262 - 69,800,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SZRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,930,518 - 115,965,023 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,933,259 - 115,937,803 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605419,411,780 - 19,444,933 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016755   ⟹   ENSHGLP00000016585
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247642,472,426 - 2,500,251 (+)Ensembl
RefSeq Acc Id: XM_004850368   ⟹   XP_004850425
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,472,771 - 2,497,886 (+)NCBI
RefSeq Acc Id: XM_004850369   ⟹   XP_004850426
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,472,771 - 2,497,886 (+)NCBI
RefSeq Acc Id: XM_021262869   ⟹   XP_021118528
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,486,500 - 2,497,886 (+)NCBI
RefSeq Acc Id: XR_205498
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,472,771 - 2,500,136 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850425 (Get FASTA)   NCBI Sequence Viewer  
  XP_004850426 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118528 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016585
Reference Protein Sequences
RefSeq Acc Id: XP_004850425   ⟸   XM_004850368
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004850426   ⟸   XM_004850369
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118528   ⟸   XM_021262869
- Peptide Label: isoform X3
- UniProtKB: G5BRU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016585   ⟸   ENSHGLT00000016755


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011856 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016755 ENTREZGENE
InterPro SUZ UniProtKB/TrEMBL
  SUZ-C UniProtKB/TrEMBL
  SZRD1 UniProtKB/TrEMBL
NCBI Gene Szrd1 ENTREZGENE
PANTHER SUZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SUZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SUZ UniProtKB/TrEMBL
  SUZ-C UniProtKB/TrEMBL
PROSITE SUZ UniProtKB/TrEMBL
  SUZ_C UniProtKB/TrEMBL
UniProt G5BRU8 ENTREZGENE, UniProtKB/TrEMBL