Gpatch11 (G-patch domain containing 11) - Rat Genome Database

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Gene: Gpatch11 (G-patch domain containing 11) Heterocephalus glaber
Analyze
Symbol: Gpatch11
Name: G-patch domain containing 11
RGD ID: 18907357
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN kinetochore (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Coiled-coil domain-containing protein 75; G patch domain-containing protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473818,696,583 - 18,710,669 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
kinetochore  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gpatch11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473818,696,583 - 18,710,669 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPATCH11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38237,084,518 - 37,099,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl237,084,518 - 37,099,244 (+)EnsemblGRCh38hg38GRCh38
GRCh37237,311,661 - 37,326,387 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36237,165,165 - 37,177,206 (+)NCBINCBI36Build 36hg18NCBI36
Celera237,152,623 - 37,164,767 (+)NCBICelera
Cytogenetic Map2p22.2NCBI
HuRef237,051,794 - 37,066,588 (+)NCBIHuRef
CHM1_1237,240,939 - 37,255,733 (+)NCBICHM1_1
T2T-CHM13v2.0237,091,653 - 37,106,376 (+)NCBIT2T-CHM13v2.0
Gpatch11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391779,142,951 - 79,155,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1779,142,996 - 79,155,737 (+)EnsemblGRCm39 Ensembl
GRCm381778,835,516 - 78,848,308 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1778,835,567 - 78,848,308 (+)EnsemblGRCm38mm10GRCm38
MGSCv371779,234,856 - 79,247,648 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361778,740,647 - 78,753,366 (+)NCBIMGSCv36mm8
MGSCv361778,091,174 - 78,103,893 (+)NCBIMGSCv36mm8
Celera1783,152,129 - 83,164,888 (+)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1749.54NCBI
Gpatch11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8621,982,074 - 21,995,562 (-)NCBIGRCr8
mRatBN7.2616,229,933 - 16,243,305 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl616,233,059 - 16,243,238 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx616,542,293 - 16,552,463 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0616,864,501 - 16,874,671 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0616,345,431 - 16,355,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.061,410,461 - 1,421,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,410,507 - 1,423,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.061,401,697 - 1,412,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.461,619,937 - 1,630,116 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.161,619,941 - 1,629,692 (+)NCBI
Celera615,888,195 - 15,898,395 (-)NCBICelera
Cytogenetic Map6q12NCBI
Gpatch11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554414,879,338 - 4,891,807 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554414,879,410 - 4,890,775 (+)NCBIChiLan1.0ChiLan1.0
GPATCH11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21289,378,452 - 89,397,011 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A89,382,428 - 89,400,987 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A37,110,121 - 37,125,223 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A37,874,996 - 37,888,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A37,874,996 - 37,888,341 (+)Ensemblpanpan1.1panPan2
GPATCH11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11729,478,352 - 29,489,207 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1729,293,020 - 29,306,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01730,128,549 - 30,141,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1730,128,550 - 30,141,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11729,356,108 - 29,369,134 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01729,419,150 - 29,432,176 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01729,637,238 - 29,650,269 (+)NCBIUU_Cfam_GSD_1.0
Gpatch11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629242,500,653 - 42,511,747 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366631,167,025 - 1,177,226 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366631,167,105 - 1,177,197 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3103,098,588 - 103,119,512 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13103,100,083 - 103,111,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23109,679,720 - 109,691,696 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11470,302,399 - 70,309,392 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1470,302,511 - 70,314,491 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604541,638,281 - 41,653,325 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004839296   ⟹   XP_004839353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473818,696,583 - 18,710,669 (+)NCBI
RefSeq Acc Id: XM_021253725   ⟹   XP_021109384
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473818,697,807 - 18,710,669 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004839353 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109384 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14591 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013293
  ENSHGLP00100058684
Reference Protein Sequences
RefSeq Acc Id: XP_004839353   ⟸   XM_004839296
- UniProtKB: G5BZ80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109384   ⟸   XM_021253725
- UniProtKB: G5BZ80 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009502 ENTREZGENE
  ENSHGLG00100004989 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013432 ENTREZGENE
  ENSHGLT00100070947 UniProtKB/TrEMBL
InterPro DUF4187 UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  GPATCH11 UniProtKB/TrEMBL
KEGG Report hgl:101723885 UniProtKB/TrEMBL
NCBI Gene Gpatch11 ENTREZGENE
PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 11 UniProtKB/TrEMBL
  PTHR21032 UniProtKB/TrEMBL
Pfam DUF4187 UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
SMART DUF4187 UniProtKB/TrEMBL
  G_patch UniProtKB/TrEMBL
UniProt G5BZ80 ENTREZGENE, UniProtKB/TrEMBL