Ndufc2 (NADH:ubiquinone oxidoreductase subunit C2) - Rat Genome Database

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Gene: Ndufc2 (NADH:ubiquinone oxidoreductase subunit C2) Heterocephalus glaber
Analyze
Symbol: Ndufc2
Name: NADH:ubiquinone oxidoreductase subunit C2
RGD ID: 18906938
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); negative regulation of cellular process (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH intellectual disability (ortholog); mitochondrial metabolism disease (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 36 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) 1 subunit C2; NADH dehydrogenase [ubiquinone] 1 subunit C2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,071,049 - 1,083,802 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,071,170 - 1,084,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ndufc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,071,049 - 1,083,802 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,071,170 - 1,084,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NDUFC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381178,068,297 - 78,079,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1178,068,297 - 78,079,862 (-)EnsemblGRCh38hg38GRCh38
GRCh371177,779,343 - 77,790,908 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,457,044 - 77,468,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341177,457,044 - 77,468,579NCBI
Celera1175,087,861 - 75,099,744 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1174,077,757 - 74,089,640 (-)NCBIHuRef
CHM1_11177,662,584 - 77,674,456 (-)NCBICHM1_1
T2T-CHM13v2.01178,001,526 - 78,013,101 (-)NCBIT2T-CHM13v2.0
Ndufc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,049,210 - 97,057,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,049,210 - 97,057,009 (+)EnsemblGRCm39 Ensembl
GRCm38797,400,003 - 97,407,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl797,400,003 - 97,407,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv377104,548,513 - 104,556,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36797,275,278 - 97,282,989 (+)NCBIMGSCv36mm8
Celera797,711,074 - 97,718,839 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.49NCBI
Ndufc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,122,370 - 161,129,413 (+)NCBIGRCr8
mRatBN7.21151,711,965 - 151,718,188 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,711,901 - 151,718,189 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1159,699,921 - 159,706,148 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,880,089 - 166,886,316 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01159,753,594 - 159,759,821 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01162,369,801 - 162,376,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,369,801 - 162,376,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01168,576,274 - 168,582,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41154,635,889 - 154,642,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11154,714,294 - 154,720,517 (+)NCBI
Celera1149,811,897 - 149,818,120 (+)NCBICelera
Cytogenetic Map1q32NCBI
Ndufc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541413,867,880 - 13,878,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541413,867,880 - 13,878,040 (+)NCBIChiLan1.0ChiLan1.0
NDUFC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2979,002,976 - 79,013,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11180,046,845 - 80,056,902 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,128,457 - 73,140,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,753,054 - 76,763,568 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,720,094 - 76,763,098 (-)Ensemblpanpan1.1panPan2
NDUFC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12120,748,452 - 20,758,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2120,643,258 - 20,652,568 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02120,951,935 - 20,961,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2120,951,991 - 20,961,258 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12120,726,764 - 20,736,070 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02120,942,849 - 20,952,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02120,867,635 - 20,876,951 (+)NCBIUU_Cfam_GSD_1.0
Ndufc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,026,730 - 65,037,359 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364986,624,986 - 6,637,078 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364986,626,334 - 6,636,973 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl912,485,167 - 12,492,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1912,486,488 - 12,492,507 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2913,821,219 - 13,827,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,275,729 - 69,285,782 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,272,890 - 69,286,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604356,461,034 - 56,471,249 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019045   ⟹   ENSHGLP00000018856
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,071,049 - 1,083,802 (-)Ensembl
RefSeq Acc Id: XM_004869676   ⟹   XP_004869733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,071,170 - 1,083,967 (-)NCBI
RefSeq Acc Id: XM_021248243   ⟹   XP_021103902
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,071,170 - 1,084,002 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004869733 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103902 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018856
  ENSHGLP00100048606
GenBank Protein JAN96347 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103902   ⟸   XM_021248243
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004869733   ⟸   XM_004869676
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JT66 (UniProtKB/TrEMBL),   G5AW66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018856   ⟸   ENSHGLT00000019045


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013512 Ensembl, ENTREZGENE
  ENSHGLG00100039568 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019045 ENTREZGENE
  ENSHGLT00100060811 UniProtKB/TrEMBL
InterPro NDUC2 UniProtKB/TrEMBL
KEGG Report hgl:101717191 UniProtKB/TrEMBL
NCBI Gene Ndufc2 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 SUBUNIT C2-RELATED UniProtKB/TrEMBL
  PTHR13099 UniProtKB/TrEMBL
Pfam NDUF_C2 UniProtKB/TrEMBL
PIRSF NADH-UbQ_OxRdtase_b14.5b UniProtKB/TrEMBL
UniProt A0A0P6JT66 ENTREZGENE, UniProtKB/TrEMBL
  G5AW66 ENTREZGENE, UniProtKB/TrEMBL