Lmbr1 (limb development membrane protein 1) - Rat Genome Database

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Gene: Lmbr1 (limb development membrane protein 1) Heterocephalus glaber
Analyze
Symbol: Lmbr1
Name: limb development membrane protein 1
RGD ID: 18906828
Description: ENCODES a protein that exhibits transmembrane signaling receptor activity (inferred); INVOLVED IN embryonic digit morphogenesis (ortholog); ASSOCIATED WITH acheiropody (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: limb region 1 homolog; limb region 1 protein homolog; Limb region 1 protein-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248001,494,192 - 1,648,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248001,494,183 - 1,648,978 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Lmbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248001,494,192 - 1,648,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248001,494,183 - 1,648,978 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LMBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387156,669,012 - 156,893,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7156,668,946 - 156,893,216 (-)EnsemblGRCh38hg38GRCh38
GRCh377156,461,706 - 156,685,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367156,166,331 - 156,378,663 (-)NCBINCBI36Build 36hg18NCBI36
Build 347155,975,109 - 156,185,317NCBI
Celera7150,900,771 - 151,113,109 (-)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7150,206,410 - 150,418,614 (-)NCBIHuRef
CHM1_17156,482,285 - 156,694,637 (-)NCBICHM1_1
T2T-CHM13v2.07157,856,727 - 158,080,951 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27155,702,965 - 155,915,305 (-)NCBI
Lmbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,434,800 - 29,583,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,481,000 - 29,485,295 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl529,434,800 - 29,583,388 (-)EnsemblGRCm39 Ensembl
GRCm38529,229,802 - 29,378,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,229,802 - 29,378,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37529,556,342 - 29,704,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36529,563,850 - 29,708,979 (-)NCBIMGSCv36mm8
Celera526,746,188 - 26,894,229 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.81NCBI
Lmbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr846,649,824 - 6,820,525 (+)NCBIGRCr8
mRatBN7.245,974,687 - 6,146,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl45,974,750 - 6,146,368 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx410,964,561 - 11,104,689 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.046,778,789 - 6,918,931 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.045,124,942 - 5,265,085 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.042,116,094 - 2,274,111 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl42,116,094 - 2,201,749 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.042,172,459 - 2,330,391 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.441,177,941 - 1,344,583 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera44,186,584 - 4,352,183 (-)NCBICelera
Cytogenetic Map4q11NCBI
Lmbr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554919,171,462 - 9,217,996 (-)NCBIChiLan1.0ChiLan1.0
LMBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26193,126,963 - 193,338,373 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1745,138,039 - 45,348,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07148,301,263 - 148,512,407 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17159,995,236 - 160,151,025 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7159,999,389 - 160,152,858 (-)Ensemblpanpan1.1panPan2
LMBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11619,295,235 - 19,442,390 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1619,296,149 - 19,442,369 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1619,926,402 - 20,073,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01621,024,102 - 21,171,034 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1621,025,016 - 21,171,045 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11619,393,417 - 19,539,921 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01619,975,284 - 20,122,102 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01620,027,644 - 20,174,745 (-)NCBIUU_Cfam_GSD_1.0
Lmbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051181,986,679 - 2,145,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936797745,845 - 868,632 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936797745,851 - 873,388 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,795,497 - 1,934,947 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,795,462 - 1,934,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2181,941,562 - 1,997,710 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121124,819,580 - 125,032,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21124,819,887 - 124,981,008 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607221,034,422 - 21,261,773 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014744   ⟹   ENSHGLP00000014599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248001,494,192 - 1,648,978 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000014745   ⟹   ENSHGLP00000014600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248001,569,869 - 1,647,131 (+)Ensembl
RefSeq Acc Id: XM_004860331   ⟹   XP_004860388
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248001,494,183 - 1,648,978 (+)NCBI
RefSeq Acc Id: XM_021240844   ⟹   XP_021096503
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248001,550,337 - 1,648,978 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004860388 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096503 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17928 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014599
  ENSHGLP00000014600
  ENSHGLP00100036432
GenBank Protein JAN96248 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004860388   ⟸   XM_004860331
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IWD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096503   ⟸   XM_021240844
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000014600   ⟸   ENSHGLT00000014745
RefSeq Acc Id: ENSHGLP00000014599   ⟸   ENSHGLT00000014744


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010444 Ensembl, ENTREZGENE
  ENSHGLG00100010400 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014744 ENTREZGENE
  ENSHGLT00000014745 ENTREZGENE
  ENSHGLT00100054655 UniProtKB/TrEMBL
InterPro LIMR UniProtKB/TrEMBL
  LMBR1-like_membr_prot UniProtKB/TrEMBL
KEGG Report hgl:101719197 UniProtKB/TrEMBL
NCBI Gene Lmbr1 ENTREZGENE
PANTHER LIMB REGION 1 PROTEIN HOMOLOG UniProtKB/TrEMBL
  PTHR12625 UniProtKB/TrEMBL
Pfam LMBR1 UniProtKB/TrEMBL
PRINTS LIPOCALINIMR UniProtKB/TrEMBL
UniProt A0A0P6IWD0 ENTREZGENE, UniProtKB/TrEMBL