Tmem199 (transmembrane protein 199) - Rat Genome Database

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Gene: Tmem199 (transmembrane protein 199) Heterocephalus glaber
Analyze
Symbol: Tmem199
Name: transmembrane protein 199
RGD ID: 18906755
Description: ENCODES a protein that exhibits oxysterol binding (inferred); INVOLVED IN cellular response to increased oxygen levels (inferred); intracellular iron ion homeostasis (inferred); lysosomal lumen acidification (inferred); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type IIp (ortholog); genetic disease (ortholog); FOUND IN COPI-coated vesicle membrane (inferred); endomembrane system (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786961,890 - 966,430 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786961,888 - 965,911 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tmem199
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786961,890 - 966,430 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786961,888 - 965,911 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM199
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,357,647 - 28,363,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,357,642 - 28,363,683 (+)EnsemblGRCh38hg38GRCh38
GRCh371726,684,670 - 26,690,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,708,814 - 23,713,216 (+)NCBINCBI36Build 36hg18NCBI36
Build 341723,708,813 - 23,713,215NCBI
Celera1723,546,441 - 23,550,846 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,893,092 - 22,897,497 (+)NCBIHuRef
CHM1_11726,747,616 - 26,752,021 (+)NCBICHM1_1
T2T-CHM13v2.01729,299,496 - 29,305,534 (+)NCBIT2T-CHM13v2.0
Tmem199
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,397,881 - 78,402,994 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,397,881 - 78,402,998 (-)EnsemblGRCm39 Ensembl
GRCm381178,507,055 - 78,512,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,507,055 - 78,512,172 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,320,557 - 78,325,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,323,253 - 78,328,363 (-)NCBIMGSCv36mm8
Celera1188,139,128 - 88,144,241 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Tmem199
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,900,543 - 63,905,115 (-)NCBIGRCr8
mRatBN7.21063,402,493 - 63,407,065 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,402,494 - 63,407,108 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,035,140 - 68,039,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,540,471 - 67,545,038 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,009,993 - 63,014,565 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,775,721 - 65,780,293 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,775,715 - 65,780,349 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,863,327 - 65,867,899 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,617,003 - 64,621,575 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1062,379,068 - 62,383,640 (-)NCBICelera
Cytogenetic Map10q25NCBI
Tmem199
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,772,401 - 4,776,524 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,772,394 - 4,776,524 (-)NCBIChiLan1.0ChiLan1.0
TMEM199
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,096,421 - 36,101,069 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,976,799 - 37,981,439 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,412,229 - 28,416,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,914,604 - 28,919,194 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,914,604 - 28,919,194 (-)Ensemblpanpan1.1panPan2
TMEM199
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,607,688 - 42,614,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,607,733 - 42,611,445 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,764,608 - 41,771,703 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,426,851 - 43,433,952 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,426,891 - 43,434,130 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,211,085 - 42,218,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,502,309 - 42,509,401 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,579,367 - 42,586,467 (+)NCBIUU_Cfam_GSD_1.0
Tmem199
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,634,919 - 41,639,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,511,941 - 4,517,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,512,866 - 4,517,404 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM199
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,636,379 - 44,641,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,636,379 - 44,641,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,548,851 - 46,554,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM199
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1622,124,413 - 22,130,922 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,998,384 - 8,004,370 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025769   ⟹   ENSHGLP00000025543
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624786961,890 - 966,430 (+)Ensembl
RefSeq Acc Id: XM_004856979   ⟹   XP_004857036
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786961,888 - 965,911 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857036 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13303 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025543
  ENSHGLP00100025327
GenBank Protein JAO01517 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857036   ⟸   XM_004856979
- UniProtKB: G5BVN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025543   ⟸   ENSHGLT00000025769


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018190 Ensembl, ENTREZGENE
  ENSHGLG00100018584 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025769 ENTREZGENE
  ENSHGLT00100025586 UniProtKB/TrEMBL
InterPro ATPase_Vma12 UniProtKB/TrEMBL
KEGG Report hgl:101704965 UniProtKB/TrEMBL
NCBI Gene Tmem199 ENTREZGENE
PANTHER PTHR31394 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 199 UniProtKB/TrEMBL
Pfam Vma12 UniProtKB/TrEMBL
UniProt G5BVN7 ENTREZGENE, UniProtKB/TrEMBL