Ccdc127 (coiled-coil domain containing 127) - Rat Genome Database

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Gene: Ccdc127 (coiled-coil domain containing 127) Heterocephalus glaber
Analyze
Symbol: Ccdc127
Name: coiled-coil domain containing 127
RGD ID: 18906727
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Coiled-coil domain-containing protein 127
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475136,890 - 54,710 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475137,849 - 54,810 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Ccdc127
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475136,890 - 54,710 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475137,849 - 54,810 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCDC127
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385196,868 - 218,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5196,868 - 218,153 (-)EnsemblGRCh38hg38GRCh38
GRCh375196,983 - 218,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365257,875 - 271,297 (-)NCBINCBI36Build 36hg18NCBI36
Celera5304,440 - 317,859 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5194,636 - 208,187 (-)NCBIHuRef
CHM1_15203,485 - 215,672 (-)NCBICHM1_1
T2T-CHM13v2.05188,246 - 209,196 (-)NCBIT2T-CHM13v2.0
Ccdc127
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,498,436 - 74,513,902 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,498,428 - 74,513,902 (+)EnsemblGRCm39 Ensembl
GRCm381374,350,317 - 74,365,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,350,309 - 74,365,783 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,487,765 - 74,503,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,816,367 - 74,825,663 (+)NCBIMGSCv36mm8
Celera1376,679,653 - 76,696,001 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.17NCBI
Ccdc127
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,757,010 - 30,764,473 (-)NCBIGRCr8
mRatBN7.2128,928,420 - 28,935,885 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,928,325 - 28,935,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,729,576 - 28,737,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,729,430 - 34,736,919 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,930,198 - 28,937,687 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,538,088 - 31,545,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,539,215 - 31,545,559 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0132,964,236 - 32,971,719 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,732,942 - 29,739,285 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,735,887 - 29,742,230 (-)NCBI
Celera127,581,393 - 27,587,727 (-)NCBICelera
Cytogenetic Map1p11NCBI
Ccdc127
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495550416,843 - 36,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495550417,499 - 36,804 (-)NCBIChiLan1.0ChiLan1.0
CCDC127
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24423,385 - 434,038 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl5343,849 - 354,260 (-)Ensemblpanpan1.1panPan2
CCDC127
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,965,098 - 11,976,233 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,964,439 - 11,976,037 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,478,268 - 16,489,477 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,866,740 - 11,877,895 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,866,695 - 11,877,892 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03411,905,721 - 11,916,878 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03412,107,746 - 12,118,966 (+)NCBIUU_Cfam_GSD_1.0
Ccdc127
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213245,012,444 - 245,021,133 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368151,175,275 - 1,186,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368151,174,345 - 1,182,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC127
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,862,686 - 79,870,755 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,862,594 - 79,870,525 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCDC127
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14151,804 - 163,644 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4147,662 - 163,588 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366697213,997 - 24,227 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026331   ⟹   ENSHGLP00000026099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475136,890 - 54,710 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000026332   ⟹   ENSHGLP00000026100
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475136,890 - 47,508 (-)Ensembl
RefSeq Acc Id: XM_004845100   ⟹   XP_004845157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475137,849 - 54,810 (-)NCBI
RefSeq Acc Id: XM_021258556   ⟹   XP_021114215
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475137,849 - 54,723 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004845157 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114215 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026099
  ENSHGLP00000026100
GenBank Protein JAN96110 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004845157   ⟸   XM_004845100
- UniProtKB: G5BPG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114215   ⟸   XM_021258556
- UniProtKB: G5BPG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026099   ⟸   ENSHGLT00000026331
RefSeq Acc Id: ENSHGLP00000026100   ⟸   ENSHGLT00000026332


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018579 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026331 ENTREZGENE
  ENSHGLT00000026332 ENTREZGENE
InterPro CCDC127 UniProtKB/TrEMBL
KEGG Report hgl:101697224 UniProtKB/TrEMBL
NCBI Gene Ccdc127 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 127 UniProtKB/TrEMBL
  PTHR31958 UniProtKB/TrEMBL
UniProt G5BPG7 ENTREZGENE, UniProtKB/TrEMBL