Esrrg (estrogen related receptor gamma) - Rat Genome Database

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Gene: Esrrg (estrogen related receptor gamma) Heterocephalus glaber
Analyze
Symbol: Esrrg
Name: estrogen related receptor gamma
RGD ID: 18906710
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Fetal Growth Retardation (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: estrogen-related receptor gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624835812,742 - 1,015,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624835815,230 - 1,326,376 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Esrrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624835812,742 - 1,015,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624835815,230 - 1,326,376 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ESRRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,503,246 - 217,137,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,503,246 - 217,137,755 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,676,588 - 217,311,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,743,211 - 215,329,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 341213,064,982 - 213,651,371NCBI
Celera1189,900,435 - 190,535,016 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1187,351,966 - 187,986,618 (-)NCBIHuRef
CHM1_11217,949,719 - 218,583,931 (-)NCBICHM1_1
T2T-CHM13v2.01215,743,580 - 216,378,774 (-)NCBIT2T-CHM13v2.0
Esrrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,340,707 - 187,947,082 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,340,988 - 187,947,082 (+)EnsemblGRCm39 Ensembl
GRCm381187,608,510 - 188,214,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,608,791 - 188,214,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371189,821,738 - 190,038,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361189,698,647 - 189,915,672 (+)NCBIMGSCv36mm8
Celera1194,923,141 - 195,141,266 (+)NCBICelera
Cytogenetic Map1H5- H6NCBI
cM Map191.83NCBI
Esrrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813101,699,043 - 102,316,877 (+)NCBIGRCr8
mRatBN7.21399,167,656 - 99,788,016 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13101,739,863 - 102,301,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013103,128,963 - 103,690,094 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013100,325,840 - 100,886,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013106,063,799 - 106,683,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013110,713,353 - 111,328,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413103,794,661 - 104,405,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113103,983,703 - 104,594,344 (+)NCBI
Celera1398,720,991 - 99,277,811 (+)NCBICelera
Cytogenetic Map13q26NCBI
Esrrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554061,560,485 - 1,788,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554061,260,240 - 1,784,652 (+)NCBIChiLan1.0ChiLan1.0
ESRRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2132,304,329 - 32,901,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1132,266,717 - 32,859,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01192,074,260 - 192,667,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11196,929,197 - 197,508,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1196,929,197 - 197,153,195 (-)Ensemblpanpan1.1panPan2
ESRRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13811,825,055 - 12,439,143 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3811,823,520 - 12,256,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3811,862,256 - 12,476,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03811,851,190 - 12,466,509 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3811,849,973 - 12,421,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13811,864,007 - 12,478,053 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03812,216,132 - 12,830,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03812,517,096 - 13,132,572 (-)NCBIUU_Cfam_GSD_1.0
Esrrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934459,454,088 - 60,048,171 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366281,830,881 - 2,058,269 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366281,635,161 - 2,058,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl106,712,860 - 6,941,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1106,710,615 - 7,371,419 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2108,646,197 - 8,720,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ESRRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12512,495,234 - 13,090,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2512,866,321 - 13,090,733 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605512,918,159 - 13,515,132 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004867386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013066530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013066531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01085172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000013209   ⟹   ENSHGLP00000013072
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624835812,742 - 974,366 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000013210   ⟹   ENSHGLP00000013073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624835815,237 - 1,015,767 (-)Ensembl
RefSeq Acc Id: XM_004867386   ⟹   XP_004867443
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 1,015,766 (-)NCBI
RefSeq Acc Id: XM_013066530   ⟹   XP_012921984
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 1,316,451 (-)NCBI
RefSeq Acc Id: XM_013066531   ⟹   XP_012921985
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 1,326,376 (-)NCBI
RefSeq Acc Id: XM_021246443   ⟹   XP_021102102
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 973,902 (-)NCBI
RefSeq Acc Id: XM_021246444   ⟹   XP_021102103
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 977,676 (-)NCBI
RefSeq Acc Id: XM_021246445   ⟹   XP_021102104
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 972,513 (-)NCBI
RefSeq Acc Id: XM_021246446   ⟹   XP_021102105
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624835815,230 - 975,150 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012921985   ⟸   XM_013066531
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921984   ⟸   XM_013066530
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867443   ⟸   XM_004867386
- Peptide Label: isoform X1
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102103   ⟸   XM_021246444
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102105   ⟸   XM_021246446
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102102   ⟸   XM_021246443
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102104   ⟸   XM_021246445
- Peptide Label: isoform X2
- UniProtKB: G5C8V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013072   ⟸   ENSHGLT00000013209
RefSeq Acc Id: ENSHGLP00000013073   ⟸   ENSHGLT00000013210


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009345 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013209 ENTREZGENE
  ENSHGLT00000013210 ENTREZGENE
Gene3D-CATH Erythroid Transcription Factor GATA-1, subunit A UniProtKB/TrEMBL
  Retinoid X Receptor UniProtKB/TrEMBL
InterPro Est_rcpt/est-rel_rcp UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Oest-rel_rcp UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene Esrrg ENTREZGENE
PANTHER ESTROGEN-RELATED RECEPTOR GAMMA UniProtKB/TrEMBL
  KNIRPS-RELATED PROTEIN-RELATED UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PIRSF ER-like_NR UniProtKB/TrEMBL
  ERR1-2-3 UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  Nuclear receptor ligand-binding domain UniProtKB/TrEMBL
UniProt G5C8V3 ENTREZGENE, UniProtKB/TrEMBL