Prelid3b (PRELI domain containing 3B) - Rat Genome Database

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Gene: Prelid3b (PRELI domain containing 3B) Heterocephalus glaber
Analyze
Symbol: Prelid3b (Ensembl: SLMO2)
Name: PRELI domain containing 3B
RGD ID: 18906704
Description: ENCODES a protein that exhibits phosphatidic acid transfer activity (inferred); INVOLVED IN intermembrane lipid transfer (inferred); phospholipid transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial intermembrane space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PRELI domain containing protein 3B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,324,148 - 25,335,670 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,324,146 - 25,335,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Prelid3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,324,148 - 25,335,670 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,324,146 - 25,335,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRELID3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,033,145 - 59,042,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,033,145 - 59,042,809 (-)EnsemblGRCh38hg38GRCh38
GRCh372057,608,200 - 57,617,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,041,595 - 57,051,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,041,599 - 57,051,264NCBI
Celera2054,348,621 - 54,358,322 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,395,117 - 54,404,818 (-)NCBIHuRef
CHM1_12057,509,588 - 57,519,296 (-)NCBICHM1_1
T2T-CHM13v2.02060,816,258 - 60,825,889 (-)NCBIT2T-CHM13v2.0
Prelid3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,306,884 - 174,314,734 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,306,860 - 174,314,874 (-)EnsemblGRCm39 Ensembl
GRCm382174,465,076 - 174,473,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,465,067 - 174,473,081 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,290,592 - 174,298,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,108,030 - 174,115,880 (-)NCBIMGSCv36mm8
Celera2180,425,854 - 180,433,694 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.96NCBI
Prelid3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,681,257 - 183,689,253 (-)NCBIGRCr8
mRatBN7.23163,263,059 - 163,271,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,262,985 - 163,271,181 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,061,802 - 167,069,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,558,234 - 175,566,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,302,660 - 173,310,653 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,567,092 - 172,574,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,567,732 - 172,574,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,613,098 - 178,620,388 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,436,443 - 162,444,456 (-)NCBICelera
Cytogenetic Map3q43NCBI
Prelid3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445551,951 - 563,324 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445552,634 - 563,324 (+)NCBIChiLan1.0ChiLan1.0
PRELID3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,796,433 - 64,806,266 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,789,860 - 64,799,326 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,384,087 - 55,393,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,745,209 - 56,754,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,745,209 - 56,754,944 (-)Ensemblpanpan1.1panPan2
PRELID3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,774,582 - 43,784,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,775,975 - 43,784,400 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,020,639 - 43,030,411 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,640,674 - 44,650,446 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,640,674 - 44,650,440 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,744,160 - 43,753,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,862,862 - 43,872,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,522,725 - 44,532,506 (-)NCBIUU_Cfam_GSD_1.0
Prelid3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,784,662 - 181,792,834 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,513,616 - 1,522,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,513,616 - 1,522,652 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRELID3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,175,043 - 59,185,078 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,545,461 - 66,555,496 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRELID3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,099,068 - 5,109,118 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605053,150,623 - 53,160,729 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004840970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01019654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000013077   ⟹   ENSHGLP00000012940
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474125,324,148 - 25,335,670 (-)Ensembl
RefSeq Acc Id: XM_004840970   ⟹   XP_004841027
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474125,324,146 - 25,335,675 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841027 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012940
  ENSHGLP00100039263
Reference Protein Sequences
RefSeq Acc Id: XP_004841027   ⟸   XM_004840970
- UniProtKB: A0A0P6JG08 (UniProtKB/TrEMBL),   G5AKZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012940   ⟸   ENSHGLT00000013077


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009253 Ensembl, ENTREZGENE
  ENSHGLG00100039546 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013077 ENTREZGENE
  ENSHGLT00100057408 UniProtKB/TrEMBL
InterPro PRELI/MSF1_dom UniProtKB/TrEMBL
  Slowmo/Ups UniProtKB/TrEMBL
KEGG Report hgl:101721312 UniProtKB/TrEMBL
NCBI Gene Prelid3b ENTREZGENE
PANTHER PRELI DOMAIN CONTAINING PROTEIN 3B UniProtKB/TrEMBL
  PTHR11158 UniProtKB/TrEMBL
Pfam PRELI UniProtKB/TrEMBL
PROSITE PRELI_MSF1 UniProtKB/TrEMBL
UniProt A0A0P6JG08 ENTREZGENE, UniProtKB/TrEMBL
  G5AKZ8 ENTREZGENE, UniProtKB/TrEMBL