Nsg1 (neuronal vesicle trafficking associated 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Nsg1 (neuronal vesicle trafficking associated 1) Heterocephalus glaber
Analyze
Symbol: Nsg1
Name: neuronal vesicle trafficking associated 1
RGD ID: 18906640
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN endosomal transport (ortholog); positive regulation of receptor recycling (ortholog); postsynaptic neurotransmitter receptor cycle (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); FOUND IN dendrite (ortholog); early endosome (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuron-specific protein family member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,506,250 - 21,529,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,507,068 - 21,529,057 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nsg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,506,250 - 21,529,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,507,068 - 21,529,057 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NSG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3844,386,532 - 4,419,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl44,348,140 - 4,419,058 (+)EnsemblGRCh38hg38GRCh38
GRCh3744,388,259 - 4,420,785 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,438,884 - 4,471,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 3444,506,823 - 4,538,856NCBI
Celera44,285,777 - 4,318,783 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef44,323,846 - 4,356,408 (+)NCBIHuRef
CHM1_144,385,947 - 4,418,741 (+)NCBICHM1_1
T2T-CHM13v2.044,350,456 - 4,388,523 (+)NCBIT2T-CHM13v2.0
Nsg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,294,537 - 38,317,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,294,536 - 38,317,251 (-)EnsemblGRCm39 Ensembl
GRCm38538,137,193 - 38,159,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,137,192 - 38,159,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,528,432 - 38,550,706 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,425,442 - 38,447,716 (-)NCBIMGSCv36mm8
Celera535,587,097 - 35,609,344 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.21NCBI
Nsg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,861,079 - 76,882,822 (+)NCBIGRCr8
mRatBN7.21472,648,771 - 72,670,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,648,741 - 72,670,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,090,481 - 77,112,223 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,331,349 - 78,353,091 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,771,417 - 74,793,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,380,264 - 77,402,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,380,262 - 77,401,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,362,126 - 77,383,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,931,947 - 77,953,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,934,337 - 77,956,080 (+)NCBI
Celera1471,598,968 - 71,620,711 (+)NCBICelera
Cytogenetic Map14q21NCBI
Nsg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,273,810 - 5,295,710 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555145,273,810 - 5,294,925 (-)NCBIChiLan1.0ChiLan1.0
NSG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v234,652,831 - 4,683,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan144,585,813 - 4,616,317 (+)NCBINHGRI_mPanPan1
PanPan1.144,467,232 - 4,496,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,467,234 - 4,496,088 (+)Ensemblpanpan1.1panPan2
NSG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,805,646 - 69,831,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,805,592 - 69,831,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBIUU_Cfam_GSD_1.0
Nsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,323,364 - 63,344,659 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647717,025,044 - 17,046,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647717,025,057 - 17,046,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,000,057 - 6,024,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,000,054 - 6,023,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NSG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,544,037 - 40,576,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2740,544,701 - 40,579,108 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604787,345,154 - 87,377,591 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020723   ⟹   ENSHGLP00000020521
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475521,506,250 - 21,529,052 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000020724   ⟹   ENSHGLP00000020522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475521,507,512 - 21,527,553 (+)Ensembl
RefSeq Acc Id: XM_004847300   ⟹   XP_004847357
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475521,507,068 - 21,529,057 (+)NCBI
RefSeq Acc Id: XM_004847301   ⟹   XP_004847358
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475521,507,074 - 21,529,057 (+)NCBI
RefSeq Acc Id: XM_013073047   ⟹   XP_012928501
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475521,507,346 - 21,528,724 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847357 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847358 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928501 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020521
  ENSHGLP00100049254
GenBank Protein JAO03040 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847357   ⟸   XM_004847300
- UniProtKB: A0A0P6JFF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847358   ⟸   XM_004847301
- UniProtKB: A0A0P6JFF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928501   ⟸   XM_013073047
- UniProtKB: A0A0P6JFF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020522   ⟸   ENSHGLT00000020724
RefSeq Acc Id: ENSHGLP00000020521   ⟸   ENSHGLT00000020723


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014668 Ensembl, ENTREZGENE
  ENSHGLG00100038114 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020723 ENTREZGENE
  ENSHGLT00100066087 UniProtKB/TrEMBL
InterPro NSG UniProtKB/TrEMBL
KEGG Report hgl:101705891 UniProtKB/TrEMBL
NCBI Gene Nsg1 ENTREZGENE
PANTHER NEURONAL VESICLE TRAFFICKING-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR28546 UniProtKB/TrEMBL
Pfam Calcyon UniProtKB/TrEMBL
PIRSF Calcyon UniProtKB/TrEMBL
UniProt A0A0P6JFF7 ENTREZGENE, UniProtKB/TrEMBL