Hapln1 (hyaluronan and proteoglycan link protein 1) - Rat Genome Database

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Gene: Hapln1 (hyaluronan and proteoglycan link protein 1) Heterocephalus glaber
Analyze
Symbol: Hapln1
Name: hyaluronan and proteoglycan link protein 1
RGD ID: 18906480
Description: ENCODES a protein that exhibits hyaluronic acid binding (inferred); INVOLVED IN cell adhesion (inferred); central nervous system development (inferred); glial cell differentiation (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Congenital Limb Deformities (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247433,789,757 - 3,855,107 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247433,789,999 - 3,855,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Hapln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247433,789,757 - 3,855,107 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247433,789,999 - 3,855,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HAPLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38583,637,805 - 83,720,855 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl583,637,805 - 83,720,855 (-)EnsemblGRCh38hg38GRCh38
GRCh37582,933,624 - 83,016,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36582,972,493 - 83,052,454 (-)NCBINCBI36Build 36hg18NCBI36
Build 34582,972,500 - 83,052,454NCBI
Celera578,839,034 - 78,921,911 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef578,141,962 - 78,224,830 (-)NCBIHuRef
CHM1_1582,366,947 - 82,449,878 (-)NCBICHM1_1
T2T-CHM13v2.0584,126,276 - 84,209,363 (-)NCBIT2T-CHM13v2.0
Hapln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391389,688,654 - 89,759,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1389,687,915 - 89,759,771 (+)EnsemblGRCm39 Ensembl
GRCm381389,540,529 - 89,611,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1389,539,796 - 89,611,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv371389,680,241 - 89,751,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361390,014,993 - 90,085,856 (+)NCBIMGSCv36mm8
Celera1393,138,718 - 93,209,423 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.5NCBI
Hapln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8222,366,967 - 22,431,709 (+)NCBIGRCr8
mRatBN7.2220,631,640 - 20,696,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl220,631,640 - 20,693,777 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx227,664,677 - 27,726,815 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0225,764,967 - 25,827,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0220,559,986 - 20,622,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0218,354,542 - 18,419,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl218,354,542 - 18,419,071 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0218,229,924 - 18,294,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4219,576,064 - 19,638,106 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1219,534,388 - 19,557,456 (+)NCBI
Celera216,774,532 - 16,836,586 (+)NCBICelera
Cytogenetic Map2q12NCBI
Hapln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541826,848,303 - 26,913,339 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541826,848,302 - 26,912,151 (+)NCBIChiLan1.0ChiLan1.0
HAPLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2431,581,888 - 31,665,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1529,735,513 - 29,817,401 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0531,560,282 - 31,643,138 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1531,879,669 - 31,963,636 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl531,879,276 - 31,964,562 (+)Ensemblpanpan1.1panPan2
HAPLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1323,999,148 - 24,077,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl323,998,545 - 24,074,580 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha325,237,411 - 25,313,949 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0323,898,912 - 23,975,479 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,932,039 - 23,977,175 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,855,989 - 23,944,815 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,828,709 - 23,905,165 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0324,115,889 - 24,192,354 (+)NCBIUU_Cfam_GSD_1.0
Hapln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213179,817,517 - 179,882,913 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364692,742,846 - 2,808,123 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364692,745,568 - 2,772,789 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAPLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl291,857,582 - 91,907,351 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1291,857,495 - 91,935,485 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2293,941,323 - 94,019,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAPLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1477,746,505 - 77,831,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604926,655,535 - 26,739,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016585   ⟹   ENSHGLP00000016416
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247433,789,757 - 3,855,107 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000016586   ⟹   ENSHGLP00000016417
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247433,789,757 - 3,822,266 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000016587   ⟹   ENSHGLP00000016418
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247433,789,757 - 3,819,332 (-)Ensembl
RefSeq Acc Id: XM_004841647   ⟹   XP_004841704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247433,789,999 - 3,855,142 (-)NCBI
RefSeq Acc Id: XM_004841648   ⟹   XP_004841705
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247433,789,999 - 3,819,161 (-)NCBI
RefSeq Acc Id: XM_004841649   ⟹   XP_004841706
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247433,789,999 - 3,819,439 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841704 (Get FASTA)   NCBI Sequence Viewer  
  XP_004841705 (Get FASTA)   NCBI Sequence Viewer  
  XP_004841706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016416
  ENSHGLP00000016417
  ENSHGLP00000016418
  ENSHGLP00000054140
  ENSHGLP00100058110
Reference Protein Sequences
RefSeq Acc Id: XP_004841704   ⟸   XM_004841647
- UniProtKB: G5AT32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841706   ⟸   XM_004841649
- UniProtKB: G5AT32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841705   ⟸   XM_004841648
- UniProtKB: G5AT32 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016417   ⟸   ENSHGLT00000016586
RefSeq Acc Id: ENSHGLP00000016418   ⟸   ENSHGLT00000016587
RefSeq Acc Id: ENSHGLP00000016416   ⟸   ENSHGLT00000016585


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011760 Ensembl, ENTREZGENE
  ENSHGLG00000034114 UniProtKB/TrEMBL
  ENSHGLG00100043819 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016585 ENTREZGENE
  ENSHGLT00000016586 ENTREZGENE
  ENSHGLT00000016587 ENTREZGENE
  ENSHGLT00000048721 UniProtKB/TrEMBL
  ENSHGLT00100065203 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
NCBI Gene Hapln1 ENTREZGENE
PANTHER AGGRECAN/VERSICAN PROTEOGLYCAN UniProtKB/TrEMBL
  HYALURONAN AND PROTEOGLYCAN LINK PROTEIN 1 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PRINTS LINKMODULE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
UniProt G5AT32 ENTREZGENE, UniProtKB/TrEMBL