Trap1 (TNF receptor associated protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Trap1 (TNF receptor associated protein 1) Heterocephalus glaber
Analyze
Symbol: Trap1
Name: TNF receptor associated protein 1
RGD ID: 18906383
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent protein folding chaperone (inferred); INVOLVED IN negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); CAKUT (ortholog); CAKUT1 (ortholog); FOUND IN cell periphery (ortholog); mitochondrial intermembrane space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock protein 75 kDa, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,446,827 - 1,511,225 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248241,446,827 - 1,511,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,446,827 - 1,511,225 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248241,446,827 - 1,511,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,658,037 - 3,717,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,651,639 - 3,717,553 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,708,038 - 3,767,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,648,039 - 3,707,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 34163,648,039 - 3,707,514NCBI
Celera163,914,746 - 3,974,292 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,677,147 - 3,736,537 (-)NCBIHuRef
CHM1_1163,708,058 - 3,767,598 (-)NCBICHM1_1
T2T-CHM13v2.0163,685,304 - 3,744,794 (-)NCBIT2T-CHM13v2.0
Trap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,857,835 - 3,895,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,857,835 - 3,895,691 (-)EnsemblGRCm39 Ensembl
GRCm38164,039,971 - 4,077,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,039,971 - 4,077,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,039,977 - 4,077,810 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,955,205 - 3,993,038 (-)NCBIMGSCv36mm8
Celera164,672,290 - 4,710,127 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.38NCBI
Trap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,971,259 - 12,005,306 (+)NCBIGRCr8
mRatBN7.21011,464,882 - 11,498,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,464,821 - 11,498,981 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1016,172,885 - 16,206,519 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,661,716 - 15,695,348 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,330,648 - 11,364,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,724,032 - 11,757,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,724,032 - 11,757,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01010,478,499 - 10,512,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,728,524 - 11,762,571 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11011,728,523 - 11,762,570 (+)NCBI
Celera1010,421,446 - 10,455,484 (+)NCBICelera
Cytogenetic Map10q12NCBI
Trap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,696,810 - 13,733,161 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,697,471 - 13,733,161 (+)NCBIChiLan1.0ChiLan1.0
TRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,182,860 - 4,242,611 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,966,432 - 8,025,977 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,578,483 - 2,637,996 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,753,707 - 3,786,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,753,799 - 3,786,429 (-)Ensemblpanpan1.1panPan2
TRAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,544,929 - 37,596,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,544,580 - 37,597,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,873,867 - 38,925,736 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,760,017 - 37,811,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,759,669 - 37,812,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,543,278 - 37,595,139 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0637,436,377 - 37,488,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,847,123 - 37,898,963 (+)NCBIUU_Cfam_GSD_1.0
Trap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,004,468 - 106,041,800 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694667,691 - 704,994 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694667,687 - 704,994 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl338,536,668 - 38,603,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1338,536,710 - 38,595,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2339,804,652 - 39,862,836 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.153,339,954 - 3,405,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl53,340,040 - 3,405,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606827,405,950 - 27,475,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014357   ⟹   ENSHGLP00000014214
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248241,446,827 - 1,511,225 (-)Ensembl
RefSeq Acc Id: XM_004864762   ⟹   XP_004864819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248241,446,827 - 1,511,062 (-)NCBI
RefSeq Acc Id: XM_021244414   ⟹   XP_021100073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248241,446,997 - 1,487,065 (-)NCBI
RefSeq Acc Id: XM_021244415   ⟹   XP_021100074
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248241,446,997 - 1,489,232 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004864819 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100073 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014214
GenBank Protein JAN98808 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864819   ⟸   XM_004864762
- Peptide Label: isoform X1
- UniProtKB: G5B1G7 (UniProtKB/TrEMBL),   A0A0P6J364 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100074   ⟸   XM_021244415
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J364 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100073   ⟸   XM_021244414
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J364 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014214   ⟸   ENSHGLT00000014357


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010156 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014357 ENTREZGENE
Gene3D-CATH 1.20.120.790 UniProtKB/TrEMBL
  3.30.230.80 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
  3.40.50.11260 UniProtKB/TrEMBL
InterPro HATPase_C UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  HSP90_C UniProtKB/TrEMBL
  Hsp90_fam UniProtKB/TrEMBL
  Hsp90_N UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
NCBI Gene Trap1 ENTREZGENE
PANTHER HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
  PTHR11528 UniProtKB/TrEMBL
Pfam HATPase_c_3 UniProtKB/TrEMBL
  HSP90 UniProtKB/TrEMBL
PIRSF Hsp90 UniProtKB/TrEMBL
PRINTS HEATSHOCK90 UniProtKB/TrEMBL
SMART HATPase_c UniProtKB/TrEMBL
Superfamily-SCOP SSF110942 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF55874 UniProtKB/TrEMBL
UniProt A0A0P6J364 ENTREZGENE, UniProtKB/TrEMBL
  G5B1G7 ENTREZGENE, UniProtKB/TrEMBL