Gmeb1 (glucocorticoid modulatory element binding protein 1) - Rat Genome Database

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Gene: Gmeb1 (glucocorticoid modulatory element binding protein 1) Heterocephalus glaber
Analyze
Symbol: Gmeb1
Name: glucocorticoid modulatory element binding protein 1
RGD ID: 18906321
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Glucocorticoid modulatory element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476412,474,054 - 12,517,848 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476412,473,696 - 12,515,592 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Gmeb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476412,474,054 - 12,517,848 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476412,473,696 - 12,515,592 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GMEB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,668,229 - 28,719,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,668,778 - 28,719,353 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,995,296 - 29,045,865 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,867,831 - 28,913,985 (+)NCBINCBI36Build 36hg18NCBI36
Celera127,390,404 - 27,437,665 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef127,247,839 - 27,294,667 (+)NCBIHuRef
CHM1_1129,110,681 - 29,157,440 (+)NCBICHM1_1
T2T-CHM13v2.0128,510,195 - 28,561,345 (+)NCBIT2T-CHM13v2.0
Gmeb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394131,948,336 - 131,988,919 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4131,948,336 - 131,988,913 (-)EnsemblGRCm39 Ensembl
GRCm384132,221,025 - 132,261,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,221,025 - 132,261,602 (-)EnsemblGRCm38mm10GRCm38
MGSCv374131,776,940 - 131,817,464 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,497,095 - 131,523,928 (-)NCBIMGSCv36mm8
Celera4130,382,350 - 130,413,696 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map464.99NCBI
Gmeb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85149,703,035 - 149,746,474 (-)NCBIGRCr8
mRatBN7.25144,421,151 - 144,462,448 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,420,555 - 144,462,602 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,121,193 - 147,162,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05148,891,033 - 148,932,140 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05148,880,164 - 148,920,517 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,408,075 - 150,449,252 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,405,918 - 150,439,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,078,309 - 154,108,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,112,529 - 151,143,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5142,855,081 - 142,886,101 (-)NCBICelera
Cytogenetic Map5q36NCBI
Gmeb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,736,598 - 7,766,810 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554527,732,095 - 7,766,810 (+)NCBIChiLan1.0ChiLan1.0
GMEB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,124,099 - 198,174,611 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,243,446 - 197,292,763 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,939,361 - 27,989,691 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,975,257 - 29,019,225 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,985,464 - 29,019,225 (+)Ensemblpanpan1.1panPan2
GMEB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,805,844 - 71,843,141 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,808,475 - 71,842,211 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,381,661 - 68,418,505 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,364,761 - 72,401,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,366,152 - 72,401,594 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,193,448 - 69,230,334 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,201,203 - 70,238,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,199,216 - 71,236,102 (-)NCBIUU_Cfam_GSD_1.0
Gmeb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,922,951 - 46,955,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,747,935 - 12,781,074 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,747,987 - 12,781,077 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMEB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,657,542 - 85,702,058 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1685,657,519 - 85,701,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GMEB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120104,096,913 - 104,142,565 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20104,093,176 - 104,127,259 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603312,377,909 - 12,424,805 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004850773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004850774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004850775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021263210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01044824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01044825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH166324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000018266   ⟹   ENSHGLP00000018089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476412,474,054 - 12,517,848 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000018267   ⟹   ENSHGLP00000018090
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476412,474,054 - 12,514,392 (+)Ensembl
RefSeq Acc Id: XM_004850773   ⟹   XP_004850830
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,411 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_004850774   ⟹   XP_004850831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,479,010 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_004850775   ⟹   XP_004850832
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,473,696 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_013074386   ⟹   XP_012929840
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,473,740 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_013074389   ⟹   XP_012929843
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,482,088 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263202   ⟹   XP_021118861
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,411 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263203   ⟹   XP_021118862
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,411 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263204   ⟹   XP_021118863
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,510 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263205   ⟹   XP_021118864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,479,015 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263207   ⟹   XP_021118866
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,411 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263208   ⟹   XP_021118867
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,474,421 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263209   ⟹   XP_021118868
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,473,696 - 12,515,592 (+)NCBI
RefSeq Acc Id: XM_021263210   ⟹   XP_021118869
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476412,473,742 - 12,515,592 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004850832   ⟸   XM_004850775
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118868   ⟸   XM_021263209
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012929840   ⟸   XM_013074386
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118869   ⟸   XM_021263210
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118862   ⟸   XM_021263203
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118861   ⟸   XM_021263202
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118866   ⟸   XM_021263207
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004850830   ⟸   XM_004850773
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118867   ⟸   XM_021263208
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118863   ⟸   XM_021263204
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004850831   ⟸   XM_004850774
- Peptide Label: isoform X1
- UniProtKB: G5AP94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118864   ⟸   XM_021263205
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012929843   ⟸   XM_013074389
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000018090   ⟸   ENSHGLT00000018267
RefSeq Acc Id: ENSHGLP00000018089   ⟸   ENSHGLT00000018266


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018267 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.10.390.10 UniProtKB/TrEMBL
InterPro SAND-like_dom_sf UniProtKB/TrEMBL
  SAND_dom UniProtKB/TrEMBL
KEGG Report hgl:101720304 UniProtKB/TrEMBL
NCBI Gene Gmeb1 ENTREZGENE
PANTHER GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR10417 UniProtKB/TrEMBL
Pfam SAND UniProtKB/TrEMBL
PROSITE SAND UniProtKB/TrEMBL
SMART SAND UniProtKB/TrEMBL
Superfamily-SCOP SSF63763 UniProtKB/TrEMBL
UniProt G5AP94 ENTREZGENE, UniProtKB/TrEMBL