Jmjd8 (jumonji domain containing 8) - Rat Genome Database

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Gene: Jmjd8 (jumonji domain containing 8) Heterocephalus glaber
Analyze
Symbol: Jmjd8
Name: jumonji domain containing 8
RGD ID: 18906276
Description: INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (inferred); positive regulation of sprouting angiogenesis (inferred); regulation of glycolytic process (inferred); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 16 (ortholog); cerebellar ataxia type 48 (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum lumen (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: JmjC domain-containing protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,494,168 - 1,495,801 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,494,168 - 1,495,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Jmjd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,494,168 - 1,495,801 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,494,168 - 1,495,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JMJD8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816681,670 - 684,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16681,670 - 684,528 (-)EnsemblGRCh38hg38GRCh38
GRCh3716731,670 - 734,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616671,668 - 674,440 (-)NCBINCBI36Build 36hg18NCBI36
Celera16931,824 - 934,596 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16653,544 - 656,316 (-)NCBIHuRef
CHM1_116731,641 - 734,413 (-)NCBICHM1_1
T2T-CHM13v2.016685,745 - 688,409 (-)NCBIT2T-CHM13v2.0
Jmjd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,048,017 - 26,050,817 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,047,841 - 26,050,817 (+)EnsemblGRCm39 Ensembl
GRCm381725,829,043 - 25,831,843 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,828,867 - 25,831,843 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,965,988 - 25,968,788 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,556,647 - 25,559,366 (+)NCBIMGSCv36mm8
Celera1726,361,866 - 26,364,666 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.92NCBI
Jmjd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,353,460 - 15,356,392 (+)NCBIGRCr8
mRatBN7.21014,848,965 - 14,851,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,848,980 - 14,851,879 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,587,989 - 19,590,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,076,865 - 19,079,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,577,145 - 14,580,044 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,195,954 - 15,198,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,195,969 - 15,198,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,008,882 - 15,011,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,094,365 - 15,097,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,094,364 - 15,097,264 (+)NCBI
Celera1014,517,922 - 14,520,821 (+)NCBICelera
Cytogenetic Map10q12NCBI
Jmjd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,519,397 - 16,521,106 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,519,394 - 16,521,106 (+)NCBIChiLan1.0ChiLan1.0
JMJD8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218922,875 - 925,741 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,706,742 - 4,709,753 (-)NCBINHGRI_mPanPan1
PanPan1.116695,575 - 698,914 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16696,710 - 698,767 (-)Ensemblpanpan1.1panPan2
JMJD8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,891,930 - 39,894,549 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,891,926 - 39,927,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,155,908 - 41,158,679 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,234,435 - 40,237,206 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,234,598 - 40,236,100 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,923,171 - 39,925,768 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,883,208 - 39,885,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,362,346 - 40,365,117 (+)NCBIUU_Cfam_GSD_1.0
Jmjd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,229,160 - 112,231,959 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501327,150 - 328,720 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501327,053 - 328,789 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JMJD8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,090,788 - 41,093,614 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,090,787 - 41,093,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,384,093 - 41,386,829 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JMJD8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15601,462 - 604,342 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5602,597 - 604,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,532,849 - 30,535,696 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011727   ⟹   ENSHGLP00000011599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249131,494,168 - 1,495,801 (-)Ensembl
RefSeq Acc Id: XM_004873818   ⟹   XP_004873875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249131,494,168 - 1,495,859 (-)NCBI
RefSeq Acc Id: XM_021251382   ⟹   XP_021107041
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249131,494,168 - 1,495,864 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873875 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107041 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14119 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011599
Reference Protein Sequences
RefSeq Acc Id: XP_021107041   ⟸   XM_021251382
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004873875   ⟸   XM_004873818
- Peptide Label: isoform X1
- UniProtKB: G5BXV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011599   ⟸   ENSHGLT00000011727


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008321 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011727 ENTREZGENE
Gene3D-CATH Cupin UniProtKB/TrEMBL
InterPro Cupin_8 UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
KEGG Report hgl:101702567 UniProtKB/TrEMBL
NCBI Gene Jmjd8 ENTREZGENE
PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD UniProtKB/TrEMBL
  JMJC DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
Pfam Cupin_8 UniProtKB/TrEMBL
PROSITE JMJC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt G5BXV8 ENTREZGENE, UniProtKB/TrEMBL